Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f04
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...   124   5e-29

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score =  124 bits (299), Expect = 5e-29
 Identities = 77/214 (35%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
 Frame = +2

Query: 20  HPFHLVDYRP*PFTGAIGVL-TLITGIIK*XXXXXXXXXXXXXXXXXXXA-YQ**RDISR 193
           H +HLVD  P P +G++G L T + G++                       +   RD+ R
Sbjct: 7   HSYHLVDPSPWPISGSLGALATTVGGVMYMHPFQGGARLLSLGLIFILYTMFVWWRDVLR 66

Query: 194 EGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXXXRLSPNIEIGRIXPPSRITP 373
           E T +G HT +V  G R G                       L+P +EIG I PP  I  
Sbjct: 67  ESTLEGHHTKVVQLGPRYGSILFIVSEVMFFFAFFWASSHSSLAPAVEIGGIWPPKGIEV 126

Query: 374 XNPFQIPLLNTIILIRSGVTVT*AHXSLIENNFSQXKQRXXXXXXXXXXXXXXQA*EYXE 553
            +P++IP LNT IL  SG  VT AH +++     +                  Q  EY +
Sbjct: 127 LDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQ 186

Query: 554 ASFTIADRIYGSTFFIATGFHGIHVIIGTLFXLI 655
           A FTI+D IYGSTFF+ATGFHG HVIIGTLF +I
Sbjct: 187 APFTISDSIYGSTFFLATGFHGFHVIIGTLFLII 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,503,839
Number of Sequences: 28952
Number of extensions: 97615
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)