Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e24
         (238 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 167 FCASSCGYTKIKLNFFRD 220
           +CA SCG+ KI   +F D
Sbjct: 396 YCAKSCGFCKIPQFYFSD 413


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 164 KFCASSCGYTKIKLNFFRD 220
           K C S+CG +K+K N FRD
Sbjct: 59  KGCGSTCGESKLK-NDFRD 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,291
Number of Sequences: 27780
Number of extensions: 36355
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)