Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e21
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)                   31   0.72 
SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)              30   1.7  
SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29)        30   2.2  
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_8281| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  30   2.2  
SB_51033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    29   5.1  
SB_29736| Best HMM Match : RVT_1 (HMM E-Value=0.39)                    29   5.1  
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)                 28   8.9  

>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
          Length = 757

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 378 DILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEE 509
           D+L+E I  GY + D+  DI  + +L   +++  G  A+ST+ +
Sbjct: 630 DLLIEDIMEGYSILDMPKDIGLQQSLPGLVDLLPGAKAESTVRK 673


>SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/76 (17%), Positives = 38/76 (50%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           V+VD+ +D D +  ++VD+ V+   +      ++ D++  + +   ++V++ +     ++
Sbjct: 121 VDVDVSVDSDVSVDVDVDVSVDVNVSVDAKVGVSADVDVSVDVDLSVDVDVSVDVDVDVD 180

Query: 507 ERNQAILDFVTKISVN 554
           E     +D    + V+
Sbjct: 181 ESVNVSVDVDVSVDVD 196



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/66 (19%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
 Frame = +3

Query: 327 VNVDIDIDQ------DSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGIS 488
           V+VD+D+D+      D +E ++VD+ V++  +     D++ D++  + +   ++V++ + 
Sbjct: 69  VDVDVDVDESVDVSVDVDESVDVDVDVDESVDAVVDVDVSVDVDVSVDVDVSVDVDVSVD 128

Query: 489 AKSTIE 506
           +  +++
Sbjct: 129 SDVSVD 134



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/76 (19%), Positives = 40/76 (52%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           V+VD+ +D D +  ++VD+ V+   +      ++ D++  + +   ++V+  +     ++
Sbjct: 199 VDVDVSVDSDVSVDVDVDVSVDVNVSVDAKVGVSVDVDVSVDVDVSVDVDESVDVDVDVD 258

Query: 507 ERNQAILDFVTKISVN 554
           E   +++D    ISV+
Sbjct: 259 E---SVVDVPVDISVD 271



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/76 (18%), Positives = 38/76 (50%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           V+VD+D+  D +  ++VD+ V++  N     D++ D++  + +   ++ ++ +     + 
Sbjct: 159 VSVDVDLSVDVDVSVDVDVDVDESVNVSVDVDVSVDVDVSVDVDVSVDSDVSVDVDVDVS 218

Query: 507 ERNQAILDFVTKISVN 554
                 +D    +SV+
Sbjct: 219 VDVNVSVDAKVGVSVD 234



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/76 (21%), Positives = 38/76 (50%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           VN+D+D+  D    ++VD+ V+      G+ D++ D+   + +   ++V++ +     + 
Sbjct: 408 VNIDVDVGVDVPVDVSVDVPVD-----VGV-DVSVDVSVDVGVDVSVDVDVSVDVDVDVS 461

Query: 507 ERNQAILDFVTKISVN 554
           E   A +D    + V+
Sbjct: 462 ENVDADVDVSVDVDVD 477


>SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)
          Length = 171

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +3

Query: 330 NVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGI 485
           +VDID+D D +  ++VD+ V+   +     D++ D++  I + K ++V++ I
Sbjct: 107 DVDIDVDMDIDVDIDVDVDVDVDMDIDVDVDMDIDVDVDIDMDKDVDVDIDI 158



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/53 (24%), Positives = 34/53 (64%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGI 485
           ++VDID+D D +  +++D+ V+   +     D++ D++K + +   ++++LG+
Sbjct: 116 IDVDIDVDVDVDVDMDIDVDVDMDID----VDVDIDMDKDVDVDIDIDMDLGM 164


>SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29)
          Length = 225

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 333 HLLLSFGFSCPFSLGSFCHLFQASFFPWPLI 241
           H +L FG S P S   F ++FQ   + WP I
Sbjct: 98  HHMLLFGCSTPASKEGFWYVFQRLLYSWPSI 128


>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 194 IQAGKNMGEGRQEVKKIRGQGKKEA*KR*QKEPSEKGQEKPKERSK 331
           IQ  K   + R+E +K + Q KKE  ++ +KE  EK ++K  ER +
Sbjct: 338 IQQEKEKQKERREKEKQKHQEKKEKERQREKEKLEKEKQKELERKE 383


>SB_8281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/80 (18%), Positives = 38/80 (47%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           V+VD+ +D D +  + VD+ V+ +       D++ D++  + +   ++V +G+     ++
Sbjct: 36  VDVDVGVDVDVDVDVGVDVDVDVVVGVDVDVDVDVDVDVDVDVGVDVDVVVGVDVDVVVD 95

Query: 507 ERNQAILDFVTKISVNTQTK 566
                 +D V  + V    +
Sbjct: 96  VEVDVEVDVVVDVGVEVDVE 115


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 206 KNMGEGRQEVKKIRGQGKKEA*KR*QKEPSEKGQEKPKERS 328
           K  G+  +++K  + Q  K+A +  Q  P  KGQ  PK +S
Sbjct: 253 KTKGQAGRKIKISKPQNHKQAPRPRQASPKTKGQASPKTKS 293


>SB_51033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           ++VDIDID D +  ++VDI V+         D+  DI+K I +   ++V++ I     I+
Sbjct: 7   MDVDIDIDMDVDIHMDVDIDVD--------IDVGIDIDKDIDMDVDIDVDIDIDMDVDID 58


>SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +3

Query: 474 ELGISAKSTIEERN--QAILDFVT--KISVNTQTKDVAQKNLFDKLNILGVN 617
           +L I+ +S +   N  Q   DF+T    ++NT+TK V   N+   + ILG N
Sbjct: 544 DLVINTQSVVGYNNKLQKATDFMTLGANAINTETKPVGAHNMAHNMGILGCN 595


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/69 (24%), Positives = 38/69 (55%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           +++DIDID D +  +++DI ++   +     D++ DI+  I +   ++++L +     I+
Sbjct: 356 LDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDLDLDLDIDLDID 415

Query: 507 ERNQAILDF 533
            R   +L F
Sbjct: 416 IRGDKVLGF 424


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +3

Query: 438 EKKI-ALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDVAQKNLFD 593
           E+KI +L+K +E EL ++     + ++ A+    TKIS+ TQ+    +K++FD
Sbjct: 792 EQKIESLEKKVE-ELELNQDDHAQSQSTALRKTETKISILTQSTKKQEKDIFD 843


>SB_29736| Best HMM Match : RVT_1 (HMM E-Value=0.39)
          Length = 412

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/76 (19%), Positives = 39/76 (51%)
 Frame = +3

Query: 327 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 506
           V++DID+D D +  ++VDI ++   +     D++ DI+  + +   +++++ I     ++
Sbjct: 307 VDIDIDVDMDIDIDMDVDIGIDVDIDVDIDMDVDIDIDVDVDIDVDMDIDMDIDVDMDVD 366

Query: 507 ERNQAILDFVTKISVN 554
                 +D    + V+
Sbjct: 367 VDMDVDVDIDMDVDVD 382


>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 900

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 396 IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEE 509
           I  GY + D+  DI  + +L   L++ LG  A+ST+ +
Sbjct: 650 IMEGYSILDMPKDIGLQQSLPGLLDLLLGAKAESTVRK 687


>SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)
          Length = 136

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 215 GEGRQEVKKIRGQGKKEA*KR*QKEPSEKGQEKPKE 322
           GEG+++VK  RG+GK++A  R   +   KG+ K ++
Sbjct: 83  GEGKEKVKTRRGEGKRKAKAR---QGEGKGKVKARQ 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,824
Number of Sequences: 59808
Number of extensions: 222389
Number of successful extensions: 713
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)