Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e20
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0277 - 16437023-16437304,16437687-16437833,16440169-164403...    28   6.4  
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216...    27   8.5  

>10_08_0277 -
           16437023-16437304,16437687-16437833,16440169-16440342,
           16441192-16441266,16441653-16441805,16442488-16442751
          Length = 364

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 575 FRCVNEKFTNTKLELAALELQMRIESGTLYSRLFYELGDLFI 450
           F  + +     +L+L+A ELQ ++ SG   +  ++ELG + +
Sbjct: 202 FFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML 243


>01_07_0370 -
           43119049-43120278,43121376-43121420,43121421-43121662,
           43121908-43122686,43123123-43123463,43123565-43123785,
           43123866-43124176,43124257-43124516,43124836-43124918,
           43124940-43125036,43125132-43125305,43126215-43126592
          Length = 1386

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 16  NYDIVCNINSRITLVNYALGKYVGRYVSNFEQLY 117
           N DIV  + S + L+  AL + VG Y+ N    +
Sbjct: 163 NGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFF 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,155
Number of Sequences: 37544
Number of extensions: 186806
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)