Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e20
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02730.1 68417.m00372 transducin family protein / WD-40 repea...    27   7.1  
At3g55320.1 68416.m06144 ABC transporter family protein similar ...    27   9.4  
At2g39480.1 68415.m04845 ABC transporter family protein related ...    27   9.4  
At1g22700.2 68414.m02837 tetratricopeptide repeat (TPR)-containi...    27   9.4  
At1g22700.1 68414.m02836 tetratricopeptide repeat (TPR)-containi...    27   9.4  

>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
           family protein similar to C. elegans putative WD-repeat
           protein C14B1.4 (SP:Q17963)
          Length = 333

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 13  GNYDIVCNINSRITLVNYALGKYVGRYVSNFEQLY 117
           G + +V  ++S + L NYA GK++  Y  +  +++
Sbjct: 225 GKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVF 259


>At3g55320.1 68416.m06144 ABC transporter family protein similar to
           multidrug resistant P-glycoprotein pmdr1 GI:4204793 from
           [Solanum tuberosum]
          Length = 1408

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  NYDIVCNINSRITLVNYALGKYVGRYVSN 102
           N DIV  + S + L+  AL + VG Y+ N
Sbjct: 192 NGDIVSQVLSDVLLIQSALSEKVGNYIHN 220


>At2g39480.1 68415.m04845 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1407

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  NYDIVCNINSRITLVNYALGKYVGRYVSN 102
           N DIV  + S + L+  AL + VG Y+ N
Sbjct: 190 NGDIVSQVLSDVLLIQSALSEKVGNYIHN 218


>At1g22700.2 68414.m02837 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain; ESTs
           gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from
           this gene
          Length = 296

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 575 FRCVNEKFTNTKLELAALELQMRIESGTLYSRLFYELGDLFI 450
           F  + +     +L+L+A ELQ ++ SG   +   +ELG + +
Sbjct: 133 FYVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVML 174


>At1g22700.1 68414.m02836 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain; ESTs
           gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from
           this gene
          Length = 301

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 575 FRCVNEKFTNTKLELAALELQMRIESGTLYSRLFYELGDLFI 450
           F  + +     +L+L+A ELQ ++ SG   +   +ELG + +
Sbjct: 138 FYVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVML 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,025,659
Number of Sequences: 28952
Number of extensions: 172009
Number of successful extensions: 240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)