BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10e14 (571 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 3.4 SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 26 3.4 SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.4 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 5.9 >SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1253 Score = 26.2 bits (55), Expect = 3.4 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = +2 Query: 68 KLLV*YNLNKTMV-VTADV-YLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYML 241 KL + YN+ T + T+D+ + +D LT N G F + Y E +N + +L Sbjct: 415 KLSLDYNVQMTSINATSDMLFAADDRRLTAFTFNSQEDIAKFGEFDISTYAEGLNFKSLL 474 >SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 981 Score = 26.2 bits (55), Expect = 3.4 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 249 KKRMILENVSTRVRQSLPVHWSSSGK*RRPAWLSLISTLTV 371 K ++ENVS + VHW S + RPA +++ T TV Sbjct: 719 KWEFLVENVSRIYHMAAEVHWMKSYQELRPA--NVLGTKTV 757 >SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 26.2 bits (55), Expect = 3.4 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = +2 Query: 452 LNLP---RPGFGYFCEARVHDTKRPKPLPEPKAVYPGRHASST 571 +NLP P GYF + + P P+ P A Y GR ASST Sbjct: 227 VNLPGAQEPNRGYFSPMHTYSSAVPGPISVPSAPY-GR-ASST 267 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 25.4 bits (53), Expect = 5.9 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +2 Query: 317 FRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKL 454 F K+K + + F NC K ++ K GV QC +EKL Sbjct: 558 FEKLK-SWMPGFGDPKNCTGKRVDEHKINSLVKEFGVSLQCFVEKL 602 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,320,038 Number of Sequences: 5004 Number of extensions: 46534 Number of successful extensions: 138 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 138 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 242064240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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