Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e14
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.7  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   8.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 494 RVHDTKRPKPLPEPKAVYP 550
           +VH TK PKP  + K   P
Sbjct: 244 KVHATKPPKPQTKTKPTSP 262


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +2

Query: 308 LEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ 436
           ++F  +V + C   FN     + +    YA  H +  Q  F+Q
Sbjct: 523 IDFKIEVTEDCNKSFNDLLTQVAELDQIYADTHAKLVQAAFEQ 565


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/59 (18%), Positives = 23/59 (38%)
 Frame = +2

Query: 203 GKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDK 379
           G + E +  E      +EN+  K I E  A++   +         C A++      +++
Sbjct: 77  GNFNEVVVREIAEIYLDENEVNKLITECSAISDADIHLKSSKLIKCFAKYKTLKEIMNE 135


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 383 SGDYAFRHCRKTQGVF 430
           S DY F  CR   G F
Sbjct: 288 SSDYGFTECRCDPGYF 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,196
Number of Sequences: 438
Number of extensions: 3292
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)