Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10e12
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 78 1e-15
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 29 0.55
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 28 0.96
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 27 1.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.2
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 5.1
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 5.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.1
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.1
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 6.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.8
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 6.8
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.0
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 9.0
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 25 9.0
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 9.0
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 77.8 bits (183), Expect = 1e-15
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
Frame = +1
Query: 97 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELG 276
LN +S + KFYST+S + + E SK + LNRPK LNA+ + +
Sbjct: 33 LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAINVDMIDSIL 89
Query: 277 KAVNDFDADSNIAAIIIT-GNEKAFAAGADIKEMQNNTYSSN---TKQGFLREWE---DI 435
+ + +SN+A +II GN ++F++G DIK + + F +E+ +
Sbjct: 90 PKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTL 148
Query: 436 SNCGKPIIAAVNGFALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLP 606
+ KP++A +NG +GGG LAM A E F PE IG + RLP
Sbjct: 149 ATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLP 208
Query: 607 RYVG 618
Y G
Sbjct: 209 GYFG 212
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.1 bits (62), Expect = 0.55
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 536 RRNSVSPRSTLAPSPEPEAPSVFPDTLAS 622
RR+S S RS + EPE PS+ + +AS
Sbjct: 10 RRSSTSKRSVIDDDSEPELPSMTKEAIAS 38
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 28.3 bits (60), Expect = 0.96
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 57 CRYCNSCFA-GKECTEQVQSGIRNKPSIHKVL 149
C+ CNS GK C+ + + R PSI +VL
Sbjct: 59 CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 1.7
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = -1
Query: 546 EFRLFAGIDDIAQHCQLTTTSKSETINSGNDGLPTVGDVL-PFTKETLFCVAAVCIVLHL 370
E F DDI ++CQ + E + G+ + L P K+ VA + I L
Sbjct: 171 ELHPFLSQDDIVKYCQSHDIA-IEAYSPLTHGIRLNDEKLVPIAKKLNISVAQLLIRWSL 229
Query: 369 ----LNISTSRKRLLVTSDDDGSNVAVGVKIIDCLPEFDKQWFA 250
+ I S K+ + SD D N + ++ L FD+ W A
Sbjct: 230 QKGYIPIIKSTKKEHMLSDLDVFNFTIPDDVVQELSSFDEHWHA 273
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 530 AKRRNSVSPRSTLAPSPEPEAPSVFP 607
AK + V+P AP EP PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 416 RKPCFVLLLYVLFCISLISAP 354
RKP F LLY ++ +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 474
K M+++ S N K F ++ WED+ +C K + NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 515 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 426
S+S SS P A+PLTA +GF + S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 527 PAKRRNSVSPRSTLAPSPEPEAP 595
P K +N++ + L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 6.8
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Frame = +1
Query: 469 NGF-ALG---GGC---ELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYV 615
NGF ALG GG LA CD G P I TIPG T + + V
Sbjct: 98 NGFYALGLSQGGLFLRALAQTCDAAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 524 MPAKRRNSVSPRSTLAPSPEPEAPSVFPD 610
+P+ R+S+SP L+P +P F D
Sbjct: 527 IPSSERSSISPSKPLSPELKPLLNEAFQD 555
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 268 ELGKAVNDFDADSNI-AAIIITGNEK---AFAAGADIKEMQNNTYSSNTKQGFLREWED 432
EL + ++++ S I A+ + N K +F IKE++ TY+ Q E++D
Sbjct: 11 ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQD 69
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +1
Query: 379 NNTYSS--NTK-QGFLREWEDISNCGKPIIAAV 468
NNT+ + N K +G+++E E +SN K + AAV
Sbjct: 85 NNTFQNPCNRKIEGYIKEIERLSNSNKNLQAAV 117
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 166 ENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEK 342
ENI V ++N LI+ +++ K + G+ +ND+D S + G EK
Sbjct: 55 ENITRTFVELQENYRLIEKIGEGTFSSVYKAEDLHYGRYINDWDIQSEVLKESSFGKEK 113
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 124 TSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVN 288
TSQ +K S E+I ++VVG N ++ + + L K GK++N
Sbjct: 24 TSQQDVK----PSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMN 74
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 381 VLHLLNISTSRKRLLVTSDDDGSNVAVGVKIIDCL 277
V+HLL++S R+L S G+ + +ID L
Sbjct: 210 VVHLLSLSNKNFRILALSATPGNKLEAIQNVIDSL 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,032
Number of Sequences: 5004
Number of extensions: 57934
Number of successful extensions: 194
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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