BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10e10 (498 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 1.2 SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 1.6 SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.1 SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 3.6 SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 6.3 SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.3 SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 6.3 >SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 698 Score = 27.5 bits (58), Expect = 1.2 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 383 FGKSNANDIYPVVLTSISSFTEWILQN 463 FG S AN + PV L S SFT +++++ Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269 >SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schizosaccharomyces pombe|chr 1|||Manual Length = 695 Score = 27.1 bits (57), Expect = 1.6 Identities = 18/61 (29%), Positives = 25/61 (40%) Frame = -3 Query: 274 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 95 S+D I L+ F H+E + +Y L E+ +N GYYD D S Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627 Query: 94 L 92 L Sbjct: 628 L 628 >SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 243 Score = 26.6 bits (56), Expect = 2.1 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = -2 Query: 365 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 258 +H+ + H S+Y R+R PG N QS H Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237 >SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 277 Score = 25.8 bits (54), Expect = 3.6 Identities = 12/49 (24%), Positives = 22/49 (44%) Frame = +2 Query: 317 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 463 D + +L + + +SF K D YP + + FT+ ++QN Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150 >SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizosaccharomyces pombe|chr 2|||Manual Length = 1706 Score = 25.0 bits (52), Expect = 6.3 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 359 NALVGI-VSFGKSNANDIYPVVLTSISSFTEWILQ 460 NAL + V FGK+ +ND+ L + + T+W+L+ Sbjct: 614 NALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLR 648 >SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1066 Score = 25.0 bits (52), Expect = 6.3 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -1 Query: 192 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 85 PSD T VP + S PW TTP P W+ Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55 >SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 25.0 bits (52), Expect = 6.3 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -2 Query: 428 W*VLRGRCHWHCS 390 W V+ GRC W CS Sbjct: 406 WEVMTGRCVWKCS 418 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,186,646 Number of Sequences: 5004 Number of extensions: 46444 Number of successful extensions: 152 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 152 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 196153982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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