Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e10
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.25 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.25 
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    29   2.3  
At5g25170.1 68418.m02984 expressed protein                             28   3.0  
At2g01050.1 68415.m00010 hypothetical protein                          28   3.0  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    28   3.0  
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    28   4.0  
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    27   7.0  
At4g11510.1 68417.m01849 expressed protein  ; expression support...    27   7.0  
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    27   9.3  
At1g61600.1 68414.m06941 expressed protein                             27   9.3  
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    27   9.3  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 136 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 32
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 136 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 32
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 255 PLYCSLQFSLLVTMSSSLWRLPSDTL 178
           P Y  L FS+LVT  +SLW L  D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 280 QILRRFGPGWWPRLRQY*LGCPCLLP 357
           Q+ RR  P W  RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152


>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -3

Query: 262 IMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTL-----GYYDTLLDNS 98
           +MT++  P  FF+    FEL E    Y AAL G  P   +    L       +D L D+ 
Sbjct: 108 VMTVMDLPRQFFM--IRFELEE---EYMAALTGG-PWRVLGNYLLVQDWSSRFDPLRDDI 161

Query: 97  TLLDVWAEVDGMCYSYDAHILVVILLREFG 8
               VW  +  + Y+Y    L++ + R  G
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLG 191


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 326 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 436
           N  +G  AF  NA   +  FG   +N IYP  +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -3

Query: 220 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 62
           HN F  L EV+   +A L       S + Q+N    G+   + D     D+W     DG 
Sbjct: 84  HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141

Query: 61  CYSYDAHILVVILLREF 11
           C+++ A    + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 269 RRDHDPCTVPCSFLCW 222
           RR+ DP ++P  ++CW
Sbjct: 47  RREEDPTSIPVEWICW 62


>At4g11510.1 68417.m01849 expressed protein  ; expression supported
           by MPSS
          Length = 85

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 22  GELRQGCEHRTSNTCHPLRPKHPAGCYYPTRCR 120
           G+ + GC+H       P  P H  GC    RCR
Sbjct: 42  GDRQPGCDHGNCPPDQPANPYH-RGCEKSKRCR 73


>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 233 NCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNALVGIVSFGKSNAN 403
           +C   +   D  +T   FC  L     R        APA+  NAL   V+ G  N N
Sbjct: 175 DCGTLFSRKDSFITHRAFCDALAEESARFVSVPP--APAYLNNALDVEVNHGNINQN 229


>At1g61600.1 68414.m06941 expressed protein 
          Length = 421

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 31  RQGCEHRTSNTCHPLRPKHPAGCYYPTRCR 120
           ++G E RTS + HP RP+   G     R R
Sbjct: 172 KKGWELRTSRSLHPRRPREALGLDEELRAR 201


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
           subunit, putative similar to contains 6 WD-40 repeats
           (PF00400); katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 974

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 155 WGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKF 286
           +G  +  GS SD NL   +   T K+ C + YKGH R ++  +F
Sbjct: 60  FGEFLASGS-SDTNLRVWD---TRKKGCIQTYKGHTRGISTIEF 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,907
Number of Sequences: 28952
Number of extensions: 255740
Number of successful extensions: 675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)