Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e05
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   201   9e-53
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   153   2e-38
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    28   1.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   2.7  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   6.2  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   6.2  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   8.2  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  201 bits (490), Expect = 9e-53
 Identities = 96/183 (52%), Positives = 125/183 (68%)
 Frame = +1

Query: 169 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 348
           W +V MGPPD I GITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 349 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 528
           + EYAPI+G  ++     KLA+G+    IK+R   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 529 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHAC 708
           K I++  PTWGNH  + +   L  K Y+Y+DP T G D++G L D++  P+GSIILLHAC
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217

Query: 709 AHN 717
           AHN
Sbjct: 218 AHN 220


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  153 bits (372), Expect = 2e-38
 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 3/184 (1%)
 Frame = +1

Query: 175 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 351
           N++    D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 352 HEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 525
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 526 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHA 705
              +++  PTW  H  +   L +    Y Y+D K   FD +G L  I   PEGSI LLHA
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187

Query: 706 CAHN 717
           CAHN
Sbjct: 188 CAHN 191


>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 707 HACNRIMEPSGIFDISSSAPCKSKPLVLGS 618
           H C+ +    G FDISS AP   K + LGS
Sbjct: 51  HVCSDLKLVKGAFDISSKAPIAGK-ITLGS 79


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 615 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 499
           +T  L++ + G+   RV S   RR P +LC S++  + L
Sbjct: 80  LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 348 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 259
           ESST   ++ L+    NKWF +     +NP
Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 327 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 220
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 327 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 220
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 541 LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSII 693
           LPT TWG  PQ    +N       +         +Q +LE +   P  SI+
Sbjct: 297 LPTVTWGTSPQDVIPINGNIPDPAHVKDNVRAASIQRSLEYMGLKPNTSIV 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,899
Number of Sequences: 5004
Number of extensions: 70582
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)