Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10e05
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical pr... 241 3e-64
U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical pr... 241 3e-64
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 218 3e-57
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 143 1e-34
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 88 7e-18
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 38 0.009
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 38 0.009
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 38 0.009
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 28 5.8
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 28 5.8
>U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical
protein C14F11.1b protein.
Length = 297
Score = 241 bits (591), Expect = 3e-64
Identities = 115/192 (59%), Positives = 145/192 (75%)
Frame = +1
Query: 142 TGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKA 321
T +R S WW++V+MGPPD ILG+TEA+K D++PKK+NLGVGAYRDD+GKPFVLPSV++A
Sbjct: 10 TAVRGKS-WWSHVEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEA 68
Query: 322 EEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLE 501
E + + L+ EYA I G +T A+LA GE+S VIKN+ T Q++SGTGALR+G E
Sbjct: 69 ERQVIAANLDKEYAGIVGLPEFTKLSAQLALGENSDVIKNKRIFTTQSISGTGALRIGSE 128
Query: 502 FITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPE 681
F++K YAK K I+ PTPTWGNH I + K+YRY+D T GFD GAL DI++IPE
Sbjct: 129 FLSK-YAKTKVIYQPTPTWGNHVPIFKFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187
Query: 682 GSIILLHACAHN 717
GS ILLHACAHN
Sbjct: 188 GSTILLHACAHN 199
>U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical
protein C14F11.1a protein.
Length = 414
Score = 241 bits (591), Expect = 3e-64
Identities = 115/192 (59%), Positives = 145/192 (75%)
Frame = +1
Query: 142 TGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKA 321
T +R S WW++V+MGPPD ILG+TEA+K D++PKK+NLGVGAYRDD+GKPFVLPSV++A
Sbjct: 10 TAVRGKS-WWSHVEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEA 68
Query: 322 EEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLE 501
E + + L+ EYA I G +T A+LA GE+S VIKN+ T Q++SGTGALR+G E
Sbjct: 69 ERQVIAANLDKEYAGIVGLPEFTKLSAQLALGENSDVIKNKRIFTTQSISGTGALRIGSE 128
Query: 502 FITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPE 681
F++K YAK K I+ PTPTWGNH I + K+YRY+D T GFD GAL DI++IPE
Sbjct: 129 FLSK-YAKTKVIYQPTPTWGNHVPIFKFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187
Query: 682 GSIILLHACAHN 717
GS ILLHACAHN
Sbjct: 188 GSTILLHACAHN 199
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 218 bits (533), Expect = 3e-57
Identities = 99/184 (53%), Positives = 137/184 (74%)
Frame = +1
Query: 166 WWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG 345
W+ NV + P D ILG+TEA+KKDT+P K+NLGVGAYRDD+GKPFVL +VR+AE+ +
Sbjct: 22 WFRNVPLAPADPILGVTEAFKKDTNPNKINLGVGAYRDDQGKPFVLRAVREAEQQIIDAK 81
Query: 346 LNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK 525
++ EY+ I+G + AKLAFG++S VI++ T Q++SGTGALR+G +F+ K +
Sbjct: 82 MDKEYSTITGVPEFAPLAAKLAFGDNSEVIRDGRVFTTQSISGTGALRIGGQFVEK-FIP 140
Query: 526 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHA 705
+K ++ PTPTW NH + L + YRY++ +T GFD++GALEDISK+PEGS+ILLHA
Sbjct: 141 SKTLFYPTPTWANHLPVFRNSGLSIQPYRYYNQETLGFDVEGALEDISKMPEGSVILLHA 200
Query: 706 CAHN 717
CAHN
Sbjct: 201 CAHN 204
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 143 bits (347), Expect = 1e-34
Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Frame = +1
Query: 163 TWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAE-EILHS 339
++++ + + PP + + Y +T P KVNL +GAYR +EG+P+VLP V + E EI +
Sbjct: 2 SFFDGIPVAPPIEVFHKNKMYLDETAPVKVNLTIGAYRTEEGQPWVLPVVHETEVEIAND 61
Query: 340 RGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHY 519
LNHEY P+ G + A +L G +SP IK + VQ LSGTGALR G EF+
Sbjct: 62 TSLNHEYLPVLGHEGFRKAATELVLGAESPAIKEERSFGVQCLSGTGALRAGAEFLAS-V 120
Query: 520 AKAKEIWLPTPTWGNHPQICNTLNLPH-KKYRYFDPKTNGFDLQGALEDISKIPEGSIIL 696
K +++ PTWGNH + Y ++D ++ L D+ PE S+I+
Sbjct: 121 CNMKTVYVSNPTWGNHKLVFKKAGFTTVADYTFWDYDNKRVHIEKFLSDLESAPEKSVII 180
Query: 697 LHACAHN 717
LH CAHN
Sbjct: 181 LHGCAHN 187
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 87.8 bits (208), Expect = 7e-18
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Frame = +1
Query: 163 TWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAE-EILHS 339
++++ + + P L +E ++K+ P K+NL + AYR ++G+P+VLP VR+ E + H
Sbjct: 4 SFFDGIHVASPIKELHTSELFQKEICPVKINLAIEAYRTEDGEPWVLPVVREIELKFPHE 63
Query: 340 RGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHY 519
NHEY PI G + + L G DS IK + +VQ +SGTGA+ +G EF+ +
Sbjct: 64 PHHNHEYLPILGHDGFCKSATALLLGNDSLAIKEGRSFSVQCISGTGAICVGAEFLAQ-V 122
Query: 520 AKAKEIWLPTP 552
K I++ P
Sbjct: 123 LSMKTIYVSNP 133
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = -2
Query: 503 NSSPSRSAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLSPLL*RIS 324
+S + S+P+P ++ T L + + SSP A+ +T V ++S + + S P ++
Sbjct: 27 SSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTFPS--SVA 84
Query: 323 SAFLTEGKTNGFPSSSLYA 267
S+ T G T+G SSS YA
Sbjct: 85 SSPSTVGSTSGAASSSSYA 103
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = -2
Query: 503 NSSPSRSAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLSPLL*RIS 324
+S + S+P+P ++ T L + + SSP A+ +T V ++S + + S P ++
Sbjct: 234 SSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTFPS--SVA 291
Query: 323 SAFLTEGKTNGFPSSSLYA 267
S+ T G T+G SSS YA
Sbjct: 292 SSPSTVGSTSGAASSSSYA 310
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = -2
Query: 503 NSSPSRSAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLSPLL*RIS 324
+S + S+P+P ++ T L + + SSP A+ +T V ++S + + S P ++
Sbjct: 234 SSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTFPS--SVA 291
Query: 323 SAFLTEGKTNGFPSSSLYA 267
S+ T G T+G SSS YA
Sbjct: 292 SSPSTVGSTSGAASSSSYA 310
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
glutamate receptor protein1 protein.
Length = 1025
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 713 CAHACNRIMEPSGIFD-ISSSAPCKSKPLVLGSK*RYFLCGKLRV 582
CA N ++E S IFD I S P S PL L + YF C L +
Sbjct: 419 CAELGNTVVEWS-IFDKIVVSGPWYSCPLTLENSTEYFCCAGLAI 462
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 713 CAHACNRIMEPSGIFD-ISSSAPCKSKPLVLGSK*RYFLCGKLRV 582
CA N ++E S IFD I S P S PL L + YF C L +
Sbjct: 419 CAELGNTVVEWS-IFDKIVVSGPWYSCPLTLENSTEYFCCAGLAI 462
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,027,495
Number of Sequences: 27780
Number of extensions: 411578
Number of successful extensions: 1157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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