Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10e04
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 31 0.035
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 0.76
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 1.8
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 3.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 4.0
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 24 4.0
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 24 5.3
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 23 9.3
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 23 9.3
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 23 9.3
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 23 9.3
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.035
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 33 WQIVFLITVSFQFITNAVFVIFVKGSVQPWNF-HDEERIGTGVEELKSLNDHKNSIKEKE 209
WQ +FLI F+ V + + SV+ NF DEE+ + +++ ND ++I EK
Sbjct: 219 WQYLFLIEGGVTFLCAIVIFLVLPVSVETANFLTDEEKT---LAKMRIENDSSSAISEKL 275
Query: 210 KLGNS*RVF 236
S VF
Sbjct: 276 SFKQSLTVF 284
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 0.76
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 42 VFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 206
VFL + F+ A + K SV+ +E +E KS ++HK K+K
Sbjct: 32 VFLHIFTLTFLFKAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDK 86
Score = 24.2 bits (50), Expect = 4.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 156 VEELKSLNDHKNSIKEKEK 212
VEELK D + S+K KEK
Sbjct: 55 VEELKRSADEEASVKRKEK 73
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 1.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 15 LKNPSRWQIVFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGT 152
LK+PS W ++ +S F N I ++ S+Q NF ++ R T
Sbjct: 855 LKHPSEWGVLQHTFISSNFFENVPCYISLEQSLQ--NFQNDIRPDT 898
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 6 KDDLKNPSRWQIVFLITVSFQ--FITNAVFV 92
+DD +NP W + + V+F F+T AV++
Sbjct: 68 EDDPENPKNWPLWAKLVVTFDVCFLTFAVYM 98
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 73 MNWKDTVMRNTICHLLGFF 17
+NWK ICH L FF
Sbjct: 182 LNWKRLYQVQNICHKLQFF 200
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 4.0
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 99 VKGSVQPW-NFHDEERIGTGVEELKSLNDHKNSIKEKEKL 215
VK QP DE++I + ++L++++D K+ + EKL
Sbjct: 510 VKQVAQPTAEVSDEKKIRSLCKKLRAIDDLKSRLNNNEKL 549
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 127 KFHGCTDPFTNITKTAL 77
KF+G D F N+ +TAL
Sbjct: 204 KFNGSLDAFRNVIRTAL 220
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 290 FLRTKLFLLNIKHKLLQ 240
FLR+++F L I++ LLQ
Sbjct: 193 FLRSRMFTLTIRYFLLQ 209
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.0 bits (47), Expect = 9.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 125 VPWLHRPFHEYHED 84
VPW + P E HED
Sbjct: 37 VPWYNIPLPELHED 50
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 23.0 bits (47), Expect = 9.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3
Query: 155 TCTDSFFVVKVPWLHRP 105
TC +VK+ WL+ P
Sbjct: 68 TCVSCKLIVKIDWLNEP 84
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 23.0 bits (47), Expect = 9.3
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FEKSEQMANSVPHNRVLPVHN 76
+E+S+ + +S+P +LPV++
Sbjct: 740 YERSKMLGDSIPELVILPVYS 760
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,056,136
Number of Sequences: 5004
Number of extensions: 16200
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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