Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e04
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0540 + 3957622-3960903                                           28   1.1  
04_01_0067 - 673381-673387,675388-678131                               28   1.5  
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394           28   1.5  
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    26   6.1  
11_04_0443 - 17808897-17809110,17809169-17813652                       25   8.0  
10_08_0264 - 16320307-16320483,16321181-16321519                       25   8.0  
05_01_0173 - 1199668-1199685,1199907-1199969,1200277-1200379,120...    25   8.0  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    25   8.0  

>01_01_0540 + 3957622-3960903
          Length = 1093

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 124 FHGCTDPFTNITKTALVMNWKDTVMRNTICHLLGFFKS 11
           F G  D FT+    A+V NW+     + +C  LG F++
Sbjct: 322 FCGILDRFTSEDVLAVVPNWRCNTTDDALCRRLGPFET 359


>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 90  VIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 206
           ++ ++GSV+   FH ++ +G  +EELK L D +  +K K
Sbjct: 679 LVNLQGSVE---FHVKKGVGCTLEELKGLKDLRGKLKIK 714


>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
          Length = 359

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 111 VQPWNFHDEERIGTGVEELKSLNDHKN 191
           ++PW+  D  RIGTG +E      HK+
Sbjct: 50  LEPWDLKDRCRIGTGAQEEWYFFSHKD 76


>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 6   KDDLKNPSRWQIVFLITVSFQFITNAVFVIF--VKGSVQPWNFHDEERIG-TGVEELKSL 176
           K ++  P  W++  +ITV+   +   VFV+   VK   +          G T ++ +   
Sbjct: 436 KSEIGRPPHWKLPVVITVAVVLVIIVVFVLVWAVKRKPREGGIRRSVSPGITSIDRVTLQ 495

Query: 177 NDHKNSIKEK 206
           N  +N  KEK
Sbjct: 496 NATENFAKEK 505


>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 127  KFHGCTDPFTNITKTALVMNWK 62
            KFH C+D  + I    +  NWK
Sbjct: 1203 KFHSCSDTISRIYMYLMDCNWK 1224


>10_08_0264 - 16320307-16320483,16321181-16321519
          Length = 171

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 287 LRTKLFLLNIKHKLLQ 240
           L   LFL++IKHKLLQ
Sbjct: 121 LALTLFLISIKHKLLQ 136


>05_01_0173 -
           1199668-1199685,1199907-1199969,1200277-1200379,
           1201408-1201514
          Length = 96

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 96  FVKGSVQPWNFHDEERIGTGVEELKSLNDH 185
           F KG   PW+ HD+   G G E    L DH
Sbjct: 68  FKKGMRHPWDGHDDHSHGHGHEHEAPL-DH 96


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 35  ANSVPHNRVLPVHN 76
           ANS PH RVLP+++
Sbjct: 556 ANSAPHERVLPLYS 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,331,950
Number of Sequences: 37544
Number of extensions: 91711
Number of successful extensions: 253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)