Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e04
         (295 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04410.1 68418.m00433 no apical meristem (NAM) family protein...    28   0.94 
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa...    26   3.8  
At3g12870.1 68416.m01604 expressed protein                             25   6.6  
At2g30360.1 68415.m03695 CBL-interacting protein kinase 11 (CIPK...    25   6.6  
At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put...    25   8.7  
At1g53550.1 68414.m06076 F-box family protein similar to F-box f...    25   8.7  
At1g11280.2 68414.m01294 S-locus protein kinase, putative simila...    25   8.7  
At1g11280.1 68414.m01296 S-locus protein kinase, putative simila...    25   8.7  

>At5g04410.1 68418.m00433 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein;
           supporting cDNA gi|6456750|gb|AF201456.1|AF201456
          Length = 567

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 93  IFVKGSVQPWNFHDEERIGTGVEELKSLN 179
           I  +GS+QP +   EE+IG GV++   +N
Sbjct: 277 IIREGSIQPCSLFPEEQIGCGVQDENVVN 305


>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 272

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  FVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEKEK 212
           F + S+Q WN  DE+   T V E   ++ H N+   +E+
Sbjct: 70  FEQDSLQSWN--DEQSETTSVVEYTDVSSHGNTFTNEEE 106


>At3g12870.1 68416.m01604 expressed protein
          Length = 206

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 179 RPQKQHQRKGEIRKFLTCFYFVTTC-ALCLIKKVSC 283
           R + +  +K   R F+T F+F  +C  L +I+ + C
Sbjct: 170 RVESKPVKKWSARDFVTLFFFSVSCLVLAMIRLILC 205


>At2g30360.1 68415.m03695 CBL-interacting protein kinase 11 (CIPK11)
           identical to CBL-interacting protein kinase 11
           [Arabidopsis thaliana] gi|13249121|gb|AAK16686; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain; identical to cDNA CBL-interacting
           protein kinase 11 (CIPK11)partial cds GI:13249120
          Length = 435

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +3

Query: 96  FVKGSVQPWNFHDEE----RIGTGVEELKSLN 179
           FV+G  +   FHD+E    ++ + +E +KSLN
Sbjct: 277 FVRGGFKQIKFHDDEIEDQKVESSLEAVKSLN 308


>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
           putative similar to glycerol-3-phosphate dehydrogenase
           GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
           [GI:1020315], Rattus norvegicus [SP|P35571]; contains
           Pfam profile PF01266 FAD dependent oxidoreductase
          Length = 629

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 162 LLHLYRFFLRRESSMAAPTLSR 97
           LLHL R++  +ES    PTL+R
Sbjct: 192 LLHLSRYYSAKESIELFPTLAR 213


>At1g53550.1 68414.m06076 F-box family protein similar to F-box
           family protein TIGR_Ath1:At3g23960
          Length = 408

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 140 FFVVKVPWLHRPFHEYHED 84
           F V+++ WLHR  HE+  +
Sbjct: 190 FKVLRITWLHRGSHEWSSE 208


>At1g11280.2 68414.m01294 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 820

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 72  ITNAVFVIFVKGSVQPWNFHDEERIG-TGVEELKSLNDHKNSIKEKEKLG 218
           I+ ++FVI   GS + W +  ++ +G T      S +  KN ++ +E  G
Sbjct: 440 ISLSIFVILAFGSYKYWRYRAKQNVGPTWAFFNNSQDSWKNGLEPQEISG 489


>At1g11280.1 68414.m01296 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 830

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 72  ITNAVFVIFVKGSVQPWNFHDEERIG-TGVEELKSLNDHKNSIKEKEKLG 218
           I+ ++FVI   GS + W +  ++ +G T      S +  KN ++ +E  G
Sbjct: 450 ISLSIFVILAFGSYKYWRYRAKQNVGPTWAFFNNSQDSWKNGLEPQEISG 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,388,103
Number of Sequences: 28952
Number of extensions: 81064
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)