Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e03
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    57   3e-09
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    45   1e-05
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   3.1  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   4.2  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   7.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.3  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = +3

Query: 393 IEPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGEN 566
           +E DK+IGL+D D+ GPS+P +M +  E          P+ +   +  MS+G LL S ++
Sbjct: 87  LEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIYVCPNLAVMSIGFLLPSEDS 146

Query: 567 AVVWRGLMVMQALERLTRHVAWGPLDCLVV 656
           +V+WRG      +++  + V W  LD L+V
Sbjct: 147 SVIWRGPKKNGLIKQFIKDVNWENLDYLIV 176


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
 Frame = +3

Query: 387 KVIEPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIE----PLLNYGVK---CMSMG 545
           KV     + G+LD D+ GPS+P M     E   N  H       P+     K    MS+G
Sbjct: 34  KVYSRPLKTGILDIDLTGPSIPRMFGKDAER--NRIHQSSAGWVPVYTDETKEIGLMSLG 91

Query: 546 LLVSGEN-AVVWRGLMVMQALERLTRHVAWGPLDCLVV 656
            L++ +N +VVWRG      + +    V+WG LD L++
Sbjct: 92  FLLTSKNDSVVWRGPKKAAMIRQFISDVSWGELDFLII 129


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 607 SSACITIKPRHTTAFSPDTNRPIDIHL--TP*LSK 509
           S++ +++ P  +TA S  TN P+D H   TP +S+
Sbjct: 296 SASQVSLSPMASTASSSVTNSPVDTHTPSTPIMSR 330


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 150 LRFSSSYVFSTRMNTIAPCLQTVRFNHSKSDIMDHRAKVMSKGLPEKKPLPGVKS 314
           LR + +Y FSTR   ++      +F+         ++  ++KG+PEK  +P + S
Sbjct: 32  LRLARAYTFSTRSTAVS------QFSLLSLSQRSFQSLKINKGIPEKHKIPLISS 80


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 562 SPDTNRPIDIHLTP 521
           +PD  RP+D H+TP
Sbjct: 262 APDNERPLDPHITP 275


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 215 CLKAWCYRVHPGTEHITTREAEKP 144
           C KA+ YR+   T HI T   EKP
Sbjct: 31  CTKAF-YRLEHQTRHIRTHTGEKP 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,960
Number of Sequences: 5004
Number of extensions: 57874
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)