Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10e03
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 109 3e-24
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 59 4e-09
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 58 6e-09
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 54 1e-07
04_04_0976 + 29839697-29840350 30 1.4
05_04_0432 + 21178662-21178798,21178973-21179033,21179260-211793... 28 5.7
12_02_1216 + 27077570-27078313 28 7.5
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 9.9
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 109 bits (261), Expect = 3e-24
Identities = 54/120 (45%), Positives = 76/120 (63%)
Frame = +3
Query: 297 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 476
+ GV II N+A A+ + ++GLLDAD++GPS+P MMN+ +
Sbjct: 27 IAGVSDIIAVASGKGGVGKSTTAVNIAVALAK-KFQLKVGLLDADIYGPSIPTMMNLHAK 85
Query: 477 PMLNDDHLIEPLLNYGVKCMSMGLLVSGENAVVWRGLMVMQALERLTRHVAWGPLDCLVV 656
P +++D + P+ NYGV+CMS+G LV + +VWRG MVM ALE++TR VAWG LD LVV
Sbjct: 86 PEVSEDMRMIPVDNYGVQCMSIGFLVDKDAPIVWRGPMVMSALEKITRGVAWGNLDILVV 145
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 396 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGENA 569
E D ++GLLD D+ GPS+P M+ + G+ + + P+ + + MS+G +L + ++A
Sbjct: 92 EMDHQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDA 151
Query: 570 VVWRGLMVMQALERLTRHVAWGPLDCLVV 656
V+WRG +++ + V WG +D LVV
Sbjct: 152 VIWRGPRKNGLIKQFLKDVDWGEIDYLVV 180
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 396 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGENA 569
E D ++GLLD D+ GPS+P M+ + G+ + + P+ + + MS+G +L + ++A
Sbjct: 96 EMDCQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDA 155
Query: 570 VVWRGLMVMQALERLTRHVAWGPLDCLVV 656
V+WRG +++ + V WG +D LVV
Sbjct: 156 VIWRGPRKNGLIKQFLKDVDWGEIDYLVV 184
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 411 IGLLDADVFGPSVPLMMNISGE--PMLNDDHLIEPLLNYGVKCMSMGLLVSGENAVVWRG 584
+G+ DADVFGPS+P M++ M + I P GVK +S G +G+ + RG
Sbjct: 170 VGIFDADVFGPSLPTMVSPENRLLVMNPESRSILPTEYLGVKMVSFGF--AGQGRAIMRG 227
Query: 585 LMVMQALERLTRHVAWGPLDCLVV 656
MV + +L WG LD LV+
Sbjct: 228 PMVSGVINQLLTTTDWGELDYLVI 251
>04_04_0976 + 29839697-29840350
Length = 217
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 338 RRCWKNYHSCKPSMCYESNRTGQGNR 415
RRCW+ PS C +S R+ QG R
Sbjct: 174 RRCWQRRRPPPPSRCGKSYRSSQGRR 199
>05_04_0432 +
21178662-21178798,21178973-21179033,21179260-21179339,
21179650-21179794,21180411-21180620,21180956-21181004,
21181199-21181326
Length = 269
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 308 KEYHTCSFRERRCWKNYHSCKPSMCY 385
+E H +++R W ++H+ +PS+C+
Sbjct: 243 EELHDEQYQQRIAWIHWHTYRPSLCH 268
>12_02_1216 + 27077570-27078313
Length = 247
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 631 HATCRVRRSSACITIKPRHTTAFSPDTNRP 542
H C V +S+C T P TTA S RP
Sbjct: 25 HGECAVDLASSCCTCAPPATTAASSRKKRP 54
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 272 QRVTREKAPTWCKEYHTCSFRERRCWKNYHS 364
+ + ++K W +EYHT + R R + H+
Sbjct: 222 EELEKQKQQEWQREYHTATGRRTRLYSRKHT 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,692
Number of Sequences: 37544
Number of extensions: 349616
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -