Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e03
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.089
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_48754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_47584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 30/55 (54%), Positives = 43/55 (78%)
 Frame = +3

Query: 492 DHLIEPLLNYGVKCMSMGLLVSGENAVVWRGLMVMQALERLTRHVAWGPLDCLVV 656
           ++ ++PL+N+G+ CMSMG LV  +  +VWRGLMVM A+E+L R VAWG LD L++
Sbjct: 85  ENQMKPLVNFGMPCMSMGFLVDDKAPIVWRGLMVMSAIEKLLRQVAWGGLDILLI 139



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 267 MSKGLPEKKPLPGVKSIIL 323
           +S+GLP K P+ GVK +IL
Sbjct: 52  LSRGLPRKWPIAGVKQVIL 70


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 534 MSMGLLV-SGENAVVWRGLMVMQALERLTRHVAWGPLDCLVV 656
           MS+G L+ S E+AVVWRG      +++    V WG +D L++
Sbjct: 168 MSIGFLLHSKEDAVVWRGPKKNAMIKQFLSDVCWGDIDYLII 209


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 516 NYGVKCMSMG-LLVSGENAVVWRGLMVMQALERLTRHVAWGPLDCLVV 656
           N GV  MS+G LL    +AV+WRG      +++  R V WG  D LVV
Sbjct: 274 NLGV--MSVGFLLAKPTDAVIWRGPKKNGLIKQFLRDVDWGDADFLVV 319


>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 123 LNMTLQR-RFLRFSSSYVFS-TRMNTIAPCLQTVRFNHSKSDIMDHRAKVMSKGLPEKKP 296
           L M++++   L+F  S V S   + T APC         + D+   R  + S  +  K+P
Sbjct: 435 LEMSIKQWNTLKFQESVVVSFNELCTKAPCSYKTNSERKRRDVNTFRPFITSDVIITKEP 494

Query: 297 LPGVKSII 320
           +P  +S++
Sbjct: 495 MPASESLL 502


>SB_48754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 305 CKEYHTCSFRERRCWKNYHSCKPSMCYESNRTGQ-GNRAPRC*CVWSFST 451
           CK+YH    +  + ++  H     +C+ S R  + GN  P     WS+S+
Sbjct: 1   CKKYHIFQQKFAKVYRLLHFTFLPLCFSSKRGYKTGNVGPEIRVTWSYSS 50


>SB_47584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 646 QSSGPHATCRVRRSSACIT----IKPRHTTAFSPDTNRP 542
           +SS  H    V   +  IT    +KP HT++ SPD N P
Sbjct: 31  RSSAQHMAVTVGNVTVIITDYKLLKPEHTSSCSPDRNSP 69


>SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 570 VVWRGLMVMQALERLTRHVAW 632
           +VWRG++   A+ERL   + W
Sbjct: 65  IVWRGIVTSSAIERLRCFIVW 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,460,630
Number of Sequences: 59808
Number of extensions: 423639
Number of successful extensions: 1581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)