Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10e03
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19540.1 68417.m02874 expressed protein                            117   6e-27
At5g50960.1 68418.m06320 nucleotide-binding family protein simil...    57   9e-09
At3g24430.1 68416.m03066 expressed protein contains Pfam profile...    55   5e-08
At5g45850.1 68418.m05640 expressed protein contains Pfam profile...    31   0.89 
At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    28   6.3  
At3g08670.1 68416.m01007 expressed protein                             27   8.3  
At1g34095.1 68414.m04227 expressed protein ; expression supporte...    27   8.3  

>At4g19540.1 68417.m02874 expressed protein
          Length = 313

 Score =  117 bits (282), Expect = 6e-27
 Identities = 62/120 (51%), Positives = 78/120 (65%)
 Frame = +3

Query: 297 LPGVKSIILXXXXXXXXXXXXXXXNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE 476
           L GVK II                NLA A+   + + +IGLLDADV+GPSVP+MMNI+ +
Sbjct: 39  LHGVKDIIAVASGKGGVGKSSTAVNLAVAL-ANKCELKIGLLDADVYGPSVPIMMNINQK 97

Query: 477 PMLNDDHLIEPLLNYGVKCMSMGLLVSGENAVVWRGLMVMQALERLTRHVAWGPLDCLVV 656
           P +N D  + P+ NYGVKCMSMGLLV  +  +VWRG MVM AL ++T+ V WG LD LVV
Sbjct: 98  PQVNQDMKMIPVENYGVKCMSMGLLVEKDAPLVWRGPMVMSALAKMTKGVDWGDLDILVV 157


>At5g50960.1 68418.m06320 nucleotide-binding family protein similar
           to Nucleotide-binding protein 1 (NBP 1) (SP:Q9R060) [Mus
           musculus]; contains Pfam PF00991 : ParA family ATPase
          Length = 350

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
 Frame = +3

Query: 402 DKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPLL---NYGVKCMSMG-LLVSGENA 569
           D ++GL+D D+ GPS+P M+ + G+ +   +    P+    N GV  MS+G +L + + A
Sbjct: 88  DHQVGLMDIDICGPSIPKMLGLEGQEIHQSNLGWSPVYVEDNLGV--MSIGFMLPNSDEA 145

Query: 570 VVWRGLMVMQALERLTRHVAWGPLDCLVV 656
           V+WRG      +++  + V WG +D LVV
Sbjct: 146 VIWRGPRKNGLIKQFLKDVYWGEIDYLVV 174


>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 532

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +3

Query: 411 IGLLDADVFGPSVPLMMNISGE--PMLNDDHLIEPLLNYGVKCMSMGLLVSGENAVVWRG 584
           +G+ DADV+GPS+P M+N       M  +   I P    GVK +S G   +G+   + RG
Sbjct: 208 VGIFDADVYGPSLPTMVNPESRILEMNPEKKTIIPTEYMGVKLVSFGF--AGQGRAIMRG 265

Query: 585 LMVMQALERLTRHVAWGPLDCLVV 656
            MV   + +L     WG LD LV+
Sbjct: 266 PMVSGVINQLLTTTEWGELDYLVI 289


>At5g45850.1 68418.m05640 expressed protein contains Pfam profile:
           PF05097 protein of unknown function (DUF688)
          Length = 444

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 657 LQRDSQVDPTPRVASDVPVLASPLSRATLQHSR 559
           + +  ++D TPR ++D+  ++ P SR TLQ  R
Sbjct: 284 MSKSQEIDATPRFSNDISRISLPKSRETLQIPR 316


>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 390 VIEPDKEIGLLDADVFGPSVPLMMNISGEPML 485
           V  PD ++ + D D+F   + L +N  G PML
Sbjct: 330 VFRPDDDVVIQDMDMFNDYLVLYLNKKGLPML 361


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 29/89 (32%), Positives = 39/89 (43%)
 Frame = -3

Query: 655 TTRQSSGPHATCRVRRSSACITIKPRHTTAFSPDTNRPIDIHLTP*LSKGSMR*SSLSIG 476
           ++ + S P  T    RSS    I+P  +++ S D  RP    L+   S  + R   LS  
Sbjct: 202 SSARPSTPTRTSSASRSSTPSRIRPGSSSS-SMDKARP---SLSSRPSTPTSR-PQLSAS 256

Query: 475 SPLIFIINGTEGPNTSASRSPISLSGSIT 389
           SP I        P+T   RSP S S S T
Sbjct: 257 SPNIIASRPNSRPSTPTRRSPSSTSLSAT 285


>At1g34095.1 68414.m04227 expressed protein ; expression supported
           by MPSS
          Length = 203

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 281 TREKAPTWCKEYHTCS-FRERRCWKNYH 361
           +++KA  WC ++ TC  + E  CWK  H
Sbjct: 102 SQKKAEKWC-DFCTCDDYFESDCWKKQH 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,363
Number of Sequences: 28952
Number of extensions: 296081
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)