Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d22
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)           29   2.4  
SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16)                     27   9.6  

>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 44/111 (39%), Positives = 65/111 (58%)
 Frame = +1

Query: 208 SIKMLLRTSRSAHVFRGVRAYSVLQHEPDKPNIQTAIPGPKSQQLLKELNTLQQAGAVQL 387
           S++ L  + R+ H+ R V   S    E +  +++T++PGPKSQ           +  ++ 
Sbjct: 97  SLRRLSSSRRALHISRPVLVASFNIDEYEGIDMRTSVPGPKSQS----------SKGMKY 146

Query: 388 FADYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKS 540
           F D++KS GNY  DADGN  LD + QI+S+P+GYNHP LL A +D   L S
Sbjct: 147 FVDFEKSKGNYVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQDPEILVS 197


>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 424 FDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 552
           +D  G  ++D     S++  G+ HP ++ A +DQ  + SL +R
Sbjct: 2   WDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSR 44


>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
          Length = 623

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 397 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 525
           YD     YFFD D + F        +  + Y   E +S+FED+
Sbjct: 73  YDAETKEYFFDRDPDLFRHLLNYYRNGKLHYPRGECVSSFEDE 115


>SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16)
          Length = 587

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
 Frame = -2

Query: 218 ILILRIKNFVDRTSRFCCTSKSNL*LGRYL-SMQQKFY-----YSPLSGTVRNNRVRLNI 57
           ++ ++ K   D T + CC ++++L LG  L SM++KF+      S L GT+++N   +  
Sbjct: 371 VMKMQQKQSRDLTFKMCCETQTDL-LGDELESMEEKFFNYEKENSLLRGTIKSNESLIGT 429

Query: 56  TE 51
            E
Sbjct: 430 LE 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,905
Number of Sequences: 59808
Number of extensions: 327108
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)