Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d19
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50010.1 68416.m05468 DC1 domain-containing protein contains ...    27   7.5  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   7.5  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    27   7.5  
At1g69150.1 68414.m07911 DC1 domain-containing protein contains ...    27   7.5  

>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 769

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 351 ERLCAICLYYVYYRNIPSCT 410
           ++LC IC+  +Y+ N  SCT
Sbjct: 490 DKLCNICITPIYFGNFYSCT 509


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 339 VVASERLCAICLYYVYYRNIPSC 407
           +   ER+C  C+Y +Y+ +  SC
Sbjct: 397 IFIEERICEACVYPIYHHSFYSC 419


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 53  CGFVSIEDEEAEGSRQRDS*AEKGKKTRIRENAKTN 160
           CG+ S  D+  E  +  D+    GK+ RI E+ + +
Sbjct: 541 CGWTSRLDQALESGKSEDTSCSSGKRARIDESYRNS 576


>At1g69150.1 68414.m07911 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 339 VVASERLCAICLYYVYYRNIPSC 407
           +   ER+C  C+Y +Y+ +  SC
Sbjct: 357 IFIEERICEACVYPIYHHSFYSC 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,366,193
Number of Sequences: 28952
Number of extensions: 182985
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)