Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10d15
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36) 93 2e-19
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14) 55 4e-08
SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 31 0.98
SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 29 3.0
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 29 4.0
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0) 28 5.2
SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0) 28 6.9
SB_23290| Best HMM Match : SRCR (HMM E-Value=0) 27 9.1
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 27 9.1
SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67) 27 9.1
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 27 9.1
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 27 9.1
>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
Length = 888
Score = 93.1 bits (221), Expect = 2e-19
Identities = 46/145 (31%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Frame = +3
Query: 180 TKLTVLDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 356
T +T L NG+++A+E+S +TVG+ ID GSRYE NGV H +E MAF+ T+K S
Sbjct: 417 THVTTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVDHPNGVTHVIEKMAFQSTAKFPSH 476
Query: 357 TDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERG 536
D+ +E +G + + R+ V+ + +P+AVE+L++ + + E++ ++
Sbjct: 477 DDIMQELEPVGGMADCTSFRDAIVYGTSSFTSGLPLAVEVLSEAVMRPQITSQEVDEQKM 536
Query: 537 VILREMQDVESNL--QEVVFDHLHA 605
++ E++++E L + ++ D +HA
Sbjct: 537 LVQFELENLEMRLDPEPILTDMVHA 561
>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 85.8 bits (203), Expect = 2e-17
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 465 AVEILADIIQNSSLAEPEIERERGVILREMQDVESNLQEVVFDHLHATAF 614
AV+ILADIIQNS+L E EIERERGVILREMQ+V++ L+EVVFDHLHATA+
Sbjct: 35 AVDILADIIQNSTLGEAEIERERGVILREMQEVDTQLEEVVFDHLHATAY 84
>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
Length = 593
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +3
Query: 183 KLTVLDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAF 332
++T LDNGL++A+ ++ + + VGL+ DAGSRYET N G+ H L + A+
Sbjct: 31 QVTTLDNGLKVASLETYSPISRVGLFFDAGSRYETDSNLGITHMLRNAAY 80
>SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 243 ATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQTDLELLVENMGAHLNAYTSRE 419
A L I GS + G+AHFLEHM F G+ K + + ++ G + NA+T E
Sbjct: 173 AAAALCIGTGSFSDPDDIPGLAHFLEHMVFMGSEKYPDENSFDAFIKKHGGNSNAFTDCE 232
Query: 420 Q 422
+
Sbjct: 233 R 233
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 30.7 bits (66), Expect = 0.98
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 42 LTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVLDNGLRIAT 221
+T + T + A T+ +++ V T+ATAAA + T TV + T
Sbjct: 580 VTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTT 639
Query: 222 EDSGAATAT 248
+ AAT T
Sbjct: 640 VTTAAATLT 648
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +3
Query: 18 VNRQGKNILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVL 197
V + T + +TT + A T+ +++ V T+ TAAA + T TV
Sbjct: 563 VTTAAATVTTAAATVTT-VTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVT 621
Query: 198 DNGLRIATEDSGAATAT 248
+ T + AAT T
Sbjct: 622 TAAATLTTVTTAAATLT 638
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 63 TTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVLDNGLRIATEDSGAAT 242
TT V T +++ V T+ TAAA + T TV + T + AAT
Sbjct: 557 TTAAATVTTAAATVTTAAATVTTVTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAAT 616
Query: 243 AT 248
T
Sbjct: 617 VT 618
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +3
Query: 42 LTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVLDNGLRIAT 221
+T + T + A T+ +++ V T+ TAAA + T TV + T
Sbjct: 590 VTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTVTTAAATLTT 649
Query: 222 EDSGAATAT 248
+ AAT T
Sbjct: 650 VTTAAATLT 658
>SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/58 (20%), Positives = 29/58 (50%)
Frame = +3
Query: 432 YAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREMQDVESNLQEVVFDHLHA 605
+ KC + + + +L + + LA + RG+ +QD+++++Q+ + H A
Sbjct: 306 WLKCHPDQLRTVLPVLLGGLSQADLASASTQALRGICEECVQDLDTDVQQTILTHCQA 363
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 265 SIQSPTVAVAAPESSVAIRKPLSSTVSLVGGTFTNA 158
S QS + AV+AP SS R P+S+ GG F+ +
Sbjct: 449 STQSISQAVSAPSSSTPSRVPISAAPPAGGGLFSGS 484
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 23 SARKKYFNS*YKDHNKNVESSNHFESNFQP--GQSGTYVSNRSCIQ 154
S+ K+Y N KD N+ V++ N N Q G YV +C+Q
Sbjct: 748 SSDKRYINGHAKDENETVKNGNMNLDNSQKYFSPEGLYVHLSTCLQ 793
>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
Length = 875
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = +3
Query: 339 TSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPE 518
T + T +ELL E + YT R + ++D P VEI ++ + EPE
Sbjct: 16 TKRPCHTQIELLEEGEKYAVVLYTWRSCSRAVPSVKSDDQPNRVEIYEKTVE---VLEPE 72
Query: 519 IERERGVILREMQDVESNLQEV 584
I + +G + M V QEV
Sbjct: 73 INKLKGFMHFAMTVVTRFCQEV 94
>SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 39 ILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVL 197
+ T +I +TT+ + V T V+++Q V TLA A + +V +T L
Sbjct: 15 VTTQTIVLTTQTIVVTTQTIVVTTQTIVVTTLAIAVTTQTIVVTTQTIVVTTL 67
>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
Length = 564
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/105 (23%), Positives = 41/105 (39%)
Frame = +3
Query: 258 WIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYA 437
W DA R + SK N A + SK + D+E E++G L T F
Sbjct: 56 WEDAEGRKKLSKINARALATLRQKLRKYSKDFEDDIEKYRESIGQPLPVVVQALSTTFCD 115
Query: 438 KCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREMQDVESN 572
++V ++E D + PE +++G R+ E +
Sbjct: 116 VLEVDNVLYSIE-SEDDSDDDFAPRPESFKKKGAQTRKAAKTEED 159
>SB_23290| Best HMM Match : SRCR (HMM E-Value=0)
Length = 478
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 296 VLGGFIAGASVDPESY-SGSGG---SRIFSSNTQTIIEYCEFSRWNIY*C 159
+LGG+ A ++V + +GSG + NT++ + C F+ W ++ C
Sbjct: 71 MLGGYAATSAVSGGRFPAGSGPIWMDNVHCINTESDLSECPFNGWGVHDC 120
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +3
Query: 3 LPIHYVNRQGKNILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPT 182
+P H V QG ++ I++TT L + S+ ++ L A +ALV+
Sbjct: 1044 IPDHQVRLQGTQVIQGDIEMTTIELSLPP-----GSESHEATALQAAV---EALVSASQQ 1095
Query: 183 KLTVLDNGLRIATEDSGA 236
++ V + + E+ GA
Sbjct: 1096 QIPVEQESMEVTEEEGGA 1113
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 184 NSQYSIMVCVLLLKIREPPLPL*DSGSTLAP 276
++QY+ C+ L++ R P LPL S +T +P
Sbjct: 442 STQYATARCIYLIRHRVPHLPLTPSRATSSP 472
>SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)
Length = 695
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 65 NKNVESSNHFESNFQPGQSGTYVSNRSCI-QTGISKCSTD*THSTR*WFAYCY*RFGSRH 241
NK++E+ +++E + G++ N CI +T I S W CY + +R
Sbjct: 478 NKSLEAKHYYEKHTCDGENSGRSPNPMCITKTSIDHVS---GFPLSDWLGACYLGYTTRE 534
Query: 242 CHCRTLDR 265
C L++
Sbjct: 535 LACHNLEQ 542
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 65 NKNVESSNHFESNFQPGQSGTYVSNRSCI-QTGISKCSTD*THSTR*WFAYCY*RFGSRH 241
NK++E+ +++E + G++ N CI +T I S W CY + +R
Sbjct: 380 NKSLEAKHYYEKHTCDGENSGRSPNPMCITKTSIDHVS---GFPLSDWLGACYLGYTTRE 436
Query: 242 CHCRTLDR 265
C L++
Sbjct: 437 LACHNLEQ 444
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -3
Query: 596 VIKHNLLKVTFDILHFAKNDTAFSFDFGFGEGGILYDISKDLYCYGDVISEAFCVKNCLF 417
V + L++ D +H+A +F+F + D+ + Y + I+ K CLF
Sbjct: 807 VNRDELMRYVIDTVHYATRGQLDTFEFKITDRAFFRDMFNNSY---EGIAMGQIAKYCLF 863
Query: 416 PGRVGVQV 393
G+ V V
Sbjct: 864 SGQPDVAV 871
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,358,051
Number of Sequences: 59808
Number of extensions: 417373
Number of successful extensions: 1050
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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