Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10d13
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 32 0.45
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322... 29 2.4
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 29 2.4
06_02_0019 - 10656005-10657511,10657712-10658739 29 3.1
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 29 4.1
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 29 4.1
10_08_0188 - 15596062-15597084,15597513-15597791 27 9.6
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 27 9.6
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 390 ETFYKTACFARVHLNQGQFLYAF-YIAVIQRSDCHGF 497
ETF+ TAC R HL QG+ + A+ Y+ + DC GF
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GF 462
>11_01_0419 +
3226224-3226756,3228010-3228169,3228256-3228435,
3228525-3228659,3229262-3229344,3229442-3229535,
3229649-3229735
Length = 423
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 542 IHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHT 420
IHK FR++ R + E +AIRA NS + L L +M T
Sbjct: 319 IHKPFRIHLGRGLHGECLAIRADGNSKLSHEIGLELSKMST 359
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Frame = +3
Query: 114 VDAVFVEKQKKILSFFQDVSQLNTDDEYYK-------IGKDYDIEMNMDNYTNKKAVEEF 272
VD V+ Q+K + ++ ++ ++ Y+ I K E + Y NK +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710
Query: 273 LKMYRTGF----MPKNLEFSVFYDKMRDEAI 353
LK+ GF + K LE D M + A+
Sbjct: 711 LKLPEMGFGTSLLQKRLEIETMTDNMSELAV 741
>06_02_0019 - 10656005-10657511,10657712-10658739
Length = 844
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/32 (31%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = -3
Query: 553 STSIFINILGY-TSYGAGTTKPWQSERWITAM 461
+T+I ++++G +YGAG+++ W++ ++ AM
Sbjct: 750 NTTIVLDMIGLLVAYGAGSSREWETSGYVIAM 781
>08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 599 GLMRPSWHLCYVNFLQHFH-IHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 444
GL+ P W + + IHK RV + + +NE + + NS VE + E
Sbjct: 1362 GLILPVWGIVEKALAKQVRQIHKRIRVARLETNDNERIVGLMIPNSAVESVLE 1414
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +2
Query: 407 CLFCACASQSRSILVCLLHRCYPA 478
CLFC SR ILVC L RC A
Sbjct: 58 CLFCEANFISRRILVCDLLRCLVA 81
>10_08_0188 - 15596062-15597084,15597513-15597791
Length = 433
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 50 WACSRRAQQCSTKAEHHKDKKCG 118
W C RR +Q ++ ++H D+K G
Sbjct: 206 WHCQRRVRQPNSLCDYHSDQKRG 228
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 129 VEKQKKILSFFQDVSQLNTDDEY 197
VE+Q SF QD++QL DD Y
Sbjct: 143 VEQQVNCFSFLQDLNQLYADDLY 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,905,116
Number of Sequences: 37544
Number of extensions: 302095
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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