Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d13
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    34   0.092
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.16 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.16 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   0.65 
At1g09910.1 68414.m01115 expressed protein                             30   1.5  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    29   2.6  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   4.6  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    28   6.1  
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    27   8.0  
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ...    27   8.0  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +2

Query: 35  CLNSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKENS--VLLPRCEPTK 181
           CL S W C   + + +   E    K+C C +C    EN    L   CEP K
Sbjct: 42  CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEK 92


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 536 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 378
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 536 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 378
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 KAVEEFLKMYRTGFMPKNLEFSVFYD 332
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 23  NHEVCLNSGWACSRRAQQCSTKAEHHKDKK 112
           NHE  LN+G  CS    Q ++   H KD +
Sbjct: 14  NHETALNAGHHCSEGTDQGTSGLSHRKDHR 43


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 114 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 278
           V A+ +EK++K L    D S      E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 275
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 132 EKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 305
           EK +K+L+  Q   + QL   D+  K+G  Y  E  +DN       ++   +  +     
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 306 NLEFSVF 326
            LEF +F
Sbjct: 142 ALEFRLF 148


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 562 IFCSTSIFINILGYTSYGAGTTKPW 488
           ++CS     + LGYT  GA T  PW
Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664


>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
           (PGS1) identical to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana]
          Length = 296

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 186 QCLVGSHLGRRTEFSFAFQQIRHPHFLSLWCSA 88
           +C++ S    RT   F  Q  RH H LS + S+
Sbjct: 33  RCIITSRYSSRTSLRFPIQISRHQHRLSYFSSS 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,676
Number of Sequences: 28952
Number of extensions: 255731
Number of successful extensions: 655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)