Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d11
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16009| Best HMM Match : Skp1 (HMM E-Value=1.1e-13)                 164   6e-41
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_51239| Best HMM Match : tRNA_m1G_MT (HMM E-Value=7.1)               28   5.4  
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   28   5.4  
SB_44640| Best HMM Match : LIM (HMM E-Value=0.44)                      28   5.4  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)                     28   7.1  
SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)          27   9.4  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_16009| Best HMM Match : Skp1 (HMM E-Value=1.1e-13)
          Length = 93

 Score =  164 bits (398), Expect = 6e-41
 Identities = 75/83 (90%), Positives = 78/83 (93%)
 Frame = +2

Query: 317 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 496
           PLPNVN+AILKKVIQWAT HKDDPP P+DDENKEKRTDDI  WD +FLKVDQGTLFELIL
Sbjct: 10  PLPNVNAAILKKVIQWATRHKDDPPPPDDDENKEKRTDDIEPWDQEFLKVDQGTLFELIL 69

Query: 497 AANYLDIKGLLDVTCKTVANMIK 565
           AANYLDIKGLLDVTCKTVANMIK
Sbjct: 70  AANYLDIKGLLDVTCKTVANMIK 92


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 207  DCNLIFGILFFQVFECSQLSEIYLSSNENALMFWRFFLKPKQ 82
            DC +    +F  + EC  L ++YL +++   ++ +F  K K+
Sbjct: 1497 DCQIECPEIFHVIMECGVLGQLYLFTSKKVFLWAKFAAKGKK 1538


>SB_51239| Best HMM Match : tRNA_m1G_MT (HMM E-Value=7.1)
          Length = 471

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 478
           L  +++ I +K  ++  Y + +  PLPE +   E+R   + S+ ADFL+ ++GT
Sbjct: 210 LEGIDAGIWEKGREYLVYVRYELRPLPEQNARGERRLRCVVSYVADFLR-NRGT 262


>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 478
           L  +++ I +K  ++  Y + +  PLPE +E  +   + + S+ ADFL++ +GT
Sbjct: 184 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLRI-RGT 236


>SB_44640| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 788

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 478
           L  +++ I +K  ++  Y + +  PLPE +   E+R   + S+ ADFL+ ++GT
Sbjct: 210 LEGIDAGIWEKGREYLVYVRYELRPLPEQNARGERRLRCVVSYVADFLR-NRGT 262


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320  LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 478
            L  +++ I +K  ++  Y + +  PLPE +E  +   + + S+ ADFL++ +GT
Sbjct: 905  LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLRI-RGT 957


>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 25.0 bits (52), Expect(2) = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 404 DENKEKRTDDISSWDADFLKVDQGTLF 484
           D N EKR +  +S+D DF K+   ++F
Sbjct: 201 DFNTEKRKNAKNSFDKDFFKLMNNSVF 227



 Score = 21.4 bits (43), Expect(2) = 6.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 KTVANMIKGKTPEEIRKTFNIK 607
           K + N + GKT E +RK  +++
Sbjct: 220 KLMNNSVFGKTMENLRKRVDVR 241


>SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 25.0 bits (52), Expect(2) = 6.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 404 DENKEKRTDDISSWDADFLKVDQGTLF 484
           D N EKR +  +S++ DFLK+   ++F
Sbjct: 42  DFNTEKRKNAKNSFEKDFLKLMNNSVF 68



 Score = 21.4 bits (43), Expect(2) = 6.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 KTVANMIKGKTPEEIRKTFNIK 607
           K + N + GKT E +RK  +++
Sbjct: 61  KLMNNSVFGKTMENLRKRVDVR 82


>SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)
          Length = 656

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 317 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKE 418
           P PN++S  +K+      +H+  PP  ++DE ++
Sbjct: 473 PGPNIHSLSVKRKCSKLEHHEGTPPADDEDEEQK 506


>SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)
          Length = 1296

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320 LPNVNSAILKKVIQWATYHKDD-PPLPEDDENKEKRTDDISSWDADFLKVDQGT 478
           L  +++ I +K  ++  Y + +  PLPE +E  +   + + S+ ADFL+ ++GT
Sbjct: 551 LEGIDAGIWEKGREYLVYVRYELRPLPEQNEGSDAFANCVVSYVADFLR-NRGT 603


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 371 YHKDDPPLPEDDENKEKRTDDIS 439
           ++K+D P  +DD+  E+ TDD S
Sbjct: 703 HNKEDKPQEKDDDKSEEETDDES 725


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,392
Number of Sequences: 59808
Number of extensions: 303902
Number of successful extensions: 768
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)