Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d08
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   0.84 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   1.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   3.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   5.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   5.9  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   5.9  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   5.9  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 68  WLLARSKFLIPNILF*YNYSSK 3
           W+LAR KF   N    YNYS+K
Sbjct: 408 WMLARPKFSQINTSHLYNYSTK 429


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 102 HVPLLGDILKDLVVSAK*ISNSKHF 28
           HVP+  DI    +V  K  +N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 53  FALTTKSLRMSPNKGT 100
           F+L++KSLR+S  KGT
Sbjct: 74  FSLSSKSLRLSNRKGT 89


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 179 PTTIRPARKIISPLETLFLGGVQITLMFLCWATFLKI 69
           P TI   RK+ S L+   +   ++ L F CW   L +
Sbjct: 73  PFTIL-CRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 123  WRSADNAHVPLLGDILKDLVVS 58
            WRSAD+ H+P +   L   V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 195 WDGRPAHHHQAGEEDHLTSGNLVSWRSADN-AHVPL 91
           WDG  A    +   D+   GN+ + R+ +N  H P+
Sbjct: 226 WDGENAESDSSLNGDNTRGGNISTNRAFNNMGHAPI 261


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 78  ECRPT-KEHERYLHSAKKQGFQR 143
           +CR     H RYL SAKK G  R
Sbjct: 20  QCRNKYHSHVRYLSSAKKSGILR 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,835
Number of Sequences: 5004
Number of extensions: 22775
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)