Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d08
         (308 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        29   1.0  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          27   2.4  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_8290| Best HMM Match : WD40 (HMM E-Value=2)                         27   2.4  
SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 26   5.4  
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)                  26   5.4  
SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)                   26   5.4  
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)                   26   7.2  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            26   7.2  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.2  
SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)                25   9.5  
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_18558| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 218 LILTNTQAGMADQPTTIRPARK-IISPLETLFLGGVQITLMFLCWA 84
           L+L   +AG+ +         K I+S + T+F+ G + T   LCWA
Sbjct: 614 LLLAKQEAGVENTTDQKYLEDKYIVSAISTVFIAGSETTATSLCWA 659


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 218  LILTNTQAGMADQPTTIRPARKIIS--PLETLFLGGVQITLM 99
            L + N      DQ T++  +  IIS  P ET   GGV+ITL+
Sbjct: 1415 LYVNNKGFARFDQATSVTSSANIISVTPTETGINGGVRITLV 1456


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 252 FVIILLLVAVMLDIDQHPGWDG 187
           FV  LL +   +DI+ HPGW G
Sbjct: 738 FVEFLLSLGWPVDIETHPGWTG 759


>SB_8290| Best HMM Match : WD40 (HMM E-Value=2)
          Length = 233

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 103 SVICTPPRNKVSRGEMIFLAGLMVV-GWSAIPAWVLVNIKH 222
           +V    P  K  R E  F   L+V  GWSA+ AWV  ++ H
Sbjct: 79  AVTANLPYPKTIRPE--FRVSLLVTSGWSAVTAWVKSSVTH 117


>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 73  FKNVAQQRNMSVICTPPRNKVSRGEMIFLAGL 168
           +  V + R MS++  P   ++ RG  +  AGL
Sbjct: 338 YSTVTRGRRMSIVVQPSTRRMRRGSSVAAAGL 369


>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
          Length = 420

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 124 RNKVSRGEMIFLAGLMVVGWSAIPAWVLVNIKH 222
           RNK  +GE+     L+V  WS +P     N KH
Sbjct: 213 RNKKRQGEICNACVLLVKRWSKLPPGTEKNWKH 245


>SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)
          Length = 155

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 69  NL*ECRPTKEHERYLHSAKKQGFQR*DDLPRRPDGGGLVCHPSLGVGQYQALPR 230
           +L EC+   ++E++  S +     R   LPR        CHP    G    L R
Sbjct: 42  SLKECKSQFQNEKWNCSVRFASSNRMPGLPRLAPSAAHYCHPDASKGSTGVLGR 95


>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 141 SGNLVSWRSADNAHVPLLGDIL 76
           SGNLVSWR   N+  P  GD++
Sbjct: 598 SGNLVSWRDLRNS--PRYGDVV 617


>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
          Length = 491

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 192 DGRPAHHHQAGEEDHL-TSGNL 130
           DG P H H+ G E H+   GNL
Sbjct: 162 DGHPHHIHEGGPEAHIGMGGNL 183


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 63  QPNL*ECRPTKEHERYLHSAKKQGFQR*DDLPRRPDGGGLVCHPS 197
           Q NL  C PTK H  + H +K Q     D+     +    +CHP+
Sbjct: 62  QANL--CHPTKTHANWNHPSKTQ-----DNCGHPSETQAYLCHPT 99


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 210  DQHPGWDG--RPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLVVSAK*ISNS 37
            +QH G +G  RP + H+A +     S  +  + + +N H      ++   +  +  +S S
Sbjct: 1891 EQHLGGEGLQRPTNRHEAVDATQNASSEVQVYNTVENPHTKFQATVITPEIAKSAPVSIS 1950


>SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 182 GLPSQPGCW--SISSITATSNKIITKK 256
           G+PS  G W   I SIT T +KI+  K
Sbjct: 260 GIPSSKGAWLLGILSITTTVSKILFGK 286


>SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)
          Length = 529

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 99  VPLLGDILKDLVVSAK*ISNSKHFVL 22
           VP+  D+L+DLV  A  ISN++   L
Sbjct: 321 VPIHSDMLRDLVCKAFCISNTRQLYL 346


>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1227

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 249 VIILLLVAVMLDIDQHPGWDGRPAHHHQAGEEDH--LTSGNLVSWRSADNAHVP 94
           +++++ V + L  D    +  R    H AGE DH   +S  L S RSA++   P
Sbjct: 234 LLVIVGVILYLGTDYLTSYQTRQQELHGAGEYDHESESSYTLTSKRSANHDTTP 287


>SB_18558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 206 WSISSITATSNKIITKKYVVYYVLS 280
           W+I+ I  +   I   KYVV Y+LS
Sbjct: 211 WTITGIMYSQLNIFLTKYVVLYLLS 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,176,871
Number of Sequences: 59808
Number of extensions: 173910
Number of successful extensions: 837
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)