Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d08
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65600.1 68418.m08253 legume lectin family protein / protein ...    32   0.090
At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1...    27   1.9  
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    27   1.9  
At5g10530.1 68418.m01219 lectin protein kinase, putative similar...    27   2.6  
At5g25800.1 68418.m03062 exonuclease family protein contains exo...    26   4.5  
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ...    26   4.5  
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi...    26   4.5  
At1g25270.1 68414.m03135 nodulin MtN21 family protein similar to...    26   4.5  
At4g15470.1 68417.m02364 expressed protein low similarity to N-m...    26   5.9  
At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    26   5.9  
At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    25   7.8  

>At5g65600.1 68418.m08253 legume lectin family protein / protein
           kinase family protein contains Pfam domains PF00138:
           Legume lectins alpha domain, PF00139: Legume lectins
           beta domain and PF00069: Protein kinase domain
          Length = 675

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 234 LVAVMLDIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNA 103
           LV V  D   +PGWD      H     + L S N  SW ++ ++
Sbjct: 153 LVHVEFDTFNNPGWDPNDVGSHVGINNNSLVSSNYTSWNASSHS 196


>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
           identical to male sterility 1 protein [Arabidopsis
           thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
           contains Pfam profile PF00628: PHD-finger; identical to
           cDNA male sterility 1 protein (ms1 gene) GI:15554514
          Length = 672

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 40  IRNLLRANNQIFKNVAQQRNMSVICTPPRNKVSRGEMI 153
           I NLL ++N     +  Q +M  + T   NK++RG+++
Sbjct: 405 ISNLLPSSNNELITLQNQNSMGKMATNGHNKITRGQVM 442


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 79  NVAQQRNMSVICTPPRNKVSRGEMIFLAGL 168
           N+ + +N+ ++C PP      G M+   GL
Sbjct: 383 NIVENKNLKLVCPPPSLCTDNGVMVAWTGL 412


>At5g10530.1 68418.m01219 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 651

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -3

Query: 234 LVAVMLDIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADN 106
           LV V  D   +P WD      H     + L S N  SW +  +
Sbjct: 136 LVYVEFDTFTNPEWDPLDVKSHVGINNNSLVSSNYTSWNATSH 178


>At5g25800.1 68418.m03062 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 567

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 146 SPLETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF*Y 18
           SP  TL L  VQ  + ++    F+  W+  ++K LIP ++  Y
Sbjct: 46  SPETTLNLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVLLY 88


>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 676

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 249 VIILLLVAVMLDIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHV 97
           V +L   ++ L + Q PG+  R + H Q G  D L S N  +  S D+A +
Sbjct: 621 VQMLTTSSIALAVPQRPGFFFRSSKHEQVGLVDRL-SINTSALCSVDDASI 670


>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 978

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = -3

Query: 177 HHHQAGEEDHLTSGNL------VSWRSADNAHVPLLGDILKDLVVSAK*ISNSKH 31
           H   +G+E H    N+      VS R++   HVP L ++L D+    K    S+H
Sbjct: 720 HEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRH 774


>At1g25270.1 68414.m03135 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 345

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -1

Query: 194 GMADQPTTIRPARKIISPLETLFLG 120
           GMA    T   A  IISPL TL LG
Sbjct: 87  GMARTSATFSAASSIISPLITLVLG 111


>At4g15470.1 68417.m02364 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 256

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 176 TTIRPARKIISPLETLFLGGVQITLMFLCWATFLKIWLL 60
           TT+  A  +++P     L G    L+FLC   F+ IW L
Sbjct: 64  TTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPL 102


>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 201 PGWDGRPAHHHQAGEEDHLTSGNLVSW 121
           P  +GRP ++H A EE H+   + V +
Sbjct: 193 PKSEGRPIYYHIADEEGHVEEESAVGY 219


>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 213 IDQHPGWDGRPAHHHQAGEEDHLTSGNLVSW 121
           ++  P  DGR  ++H A EE H+     V +
Sbjct: 427 VESPPKSDGRTIYYHVADEEGHVEDETTVGY 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,514,855
Number of Sequences: 28952
Number of extensions: 122517
Number of successful extensions: 321
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)