Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d07
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 255 WCYHGGGSQ 229
           WCY+GG ++
Sbjct: 954 WCYYGGDAR 962


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 HDSTNSISLSKTDNCCSSIHS 305
           +D   +++L+ T NC SSI S
Sbjct: 144 YDGGANLNLNGTVNCTSSIAS 164


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 320 LNSEINMMRWE 352
           LNSE + +RWE
Sbjct: 83  LNSEAHRIRWE 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,858
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)