Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d07
         (360 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    28   2.1  
At5g38630.1 68418.m04672 cytochrome B561 family protein contains...    27   3.8  
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr...    27   5.0  
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor...    26   6.6  
At5g11000.1 68418.m01281 expressed protein                             26   6.6  
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr...    26   6.6  
At1g03170.1 68414.m00294 expressed protein                             26   6.6  
At3g60520.1 68416.m06769 expressed protein                             26   8.7  
At3g15180.1 68416.m01919 proteasome-related similar to 26S prote...    26   8.7  

>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 164 PAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 27
           PA  P   KP    T  ++NPP ++    T    R+V+NP   K Q
Sbjct: 61  PAATPPREKPQHRTTRSVENPPREKPQEKT----RSVENPPREKPQ 102


>At5g38630.1 68418.m04672 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 230

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 58  ALIVNIVGGAVLCMGGFLI-PIVAPLLG 138
           A++VN +G  +L +GGF+I  +V P+ G
Sbjct: 196 AMLVNTMGVLILILGGFVILGVVTPVSG 223


>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 301

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 111 DPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSISLSK 275
           DP RG     ++  N+  K          E   +++YI +  RR  +TNS SL++
Sbjct: 102 DPQRGNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAE 156


>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
           chloroplast (NDPK2) identical to SP|O64903 Nucleoside
           diphosphate kinase II, chloroplast precursor (NDK II)
           (NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
           thaliana]; contains Pfam PF00334 : Nucleoside
           diphosphate kinase domain; contains Pfam profile
           PF00334: Nucleoside diphosphate kinase
          Length = 231

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 25  YCDLRIMGFFTALIVNIVGGAVLCMGGFLIPIVA 126
           Y DL    FF  LI  I  G V+CM    + +VA
Sbjct: 131 YKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVA 164


>At5g11000.1 68418.m01281 expressed protein
          Length = 389

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 RKHYIKVDCRRHDSTNSISLSKTDNCCSS 296
           RK ++K   +R  S++SIS+S   + CSS
Sbjct: 324 RKRFVK--SKRSSSSSSISMSSASSACSS 350


>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 928

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 155 IPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKN 48
           IPD  K      + +++  +    PPT+LT+ ++KN
Sbjct: 246 IPDLSKSENLFDLQLRDNDLTGIVPPTLLTLASLKN 281


>At1g03170.1 68414.m00294 expressed protein
          Length = 240

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 179 EAAMLPAIIPDALKPSRGATIGIKNPPMQR--TAPPTMLTIRAVK-NPMI 39
           EA   P   P  LKP     +  K PPM R  + PP +  +   K N M+
Sbjct: 86  EATTTPRAPPRQLKPQEDTNLPDKTPPMSRNNSFPPPIKFVEDSKYNRMV 135


>At3g60520.1 68416.m06769 expressed protein
          Length = 129

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 165 SRHYSRCAEAEQRCHDWDQKPSHAKNGSAYDVNY*GSEKSHDP*VTVTSHQI 10
           S +Y   A+  + C DW Q  + ++ G+ + VN   S++S+    +   HQI
Sbjct: 37  SSYYKEQADPIKIC-DWCQCEAKSRTGAKHGVNGGSSKRSYRSEYSSPHHQI 87


>At3g15180.1 68416.m01919 proteasome-related similar to 26S
           proteasome non-ATPase regulatory subunit 5 (26S
           proteasome subunit S5B) (26S protease subunit S5 basic)
           (Swiss-Prot:Q16401) [Homo sapiens]
          Length = 519

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 183 PVVLREFNGRKHYIKVDCRRHDSTNSISLSKTDNCCSSIHSGFKMS 320
           P  L E   ++  I +       T  I++    NCC +IH  F  S
Sbjct: 432 PWCLVEILAKEEIINIVTDATTETAKIAMEARYNCCKAIHEAFLCS 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,480,309
Number of Sequences: 28952
Number of extensions: 169977
Number of successful extensions: 364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)