Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d06
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   8.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 481 IMVWGFFCSGLVELTAAMSQNFATLLVMRFASGFLFNGPFAVLIS 615
           +++ G     LV     +        + RFA+GF F   +A L++
Sbjct: 697 VLLSGILLCYLVTFALVLRPTDIVCGIQRFAAGFCFTVVYAALLT 741


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 51 TVMRLAAPTRPSSG 10
          T   LAAP RPS G
Sbjct: 9  TTATLAAPQRPSGG 22


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 455 CRTRSAGARSW 487
           C+TR  G RSW
Sbjct: 345 CKTRIIGRRSW 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,146
Number of Sequences: 438
Number of extensions: 2712
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)