Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10d04
(361 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039710-7|AAB96687.1| 123|Caenorhabditis elegans Hypothetical ... 29 0.98
Z81050-8|CAB02859.1| 371|Caenorhabditis elegans Hypothetical pr... 27 5.2
AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical ... 27 5.2
Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z81050-6|CAB02856.1| 713|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 26 6.9
U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine rece... 26 6.9
U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical p... 26 6.9
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 26 6.9
Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z93376-1|CAB07570.3| 472|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z81454-2|CAB03804.2| 346|Caenorhabditis elegans Hypothetical pr... 26 9.1
U80027-15|AAC48116.2| 194|Caenorhabditis elegans Hypothetical p... 26 9.1
AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical... 26 9.1
AL132949-41|CAC35868.2| 472|Caenorhabditis elegans Hypothetical... 26 9.1
>AF039710-7|AAB96687.1| 123|Caenorhabditis elegans Hypothetical
protein C46E10.2 protein.
Length = 123
Score = 29.1 bits (62), Expect = 0.98
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 53 FYNIYWSKYNIFSTTF 100
F+NIYWS Y IF TF
Sbjct: 11 FFNIYWSFYAIFGFTF 26
>Z81050-8|CAB02859.1| 371|Caenorhabditis elegans Hypothetical
protein C50B6.10 protein.
Length = 371
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 5 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIF 133
F+YR + F + + F+N W + IF F W+ S F
Sbjct: 113 FVYRYWAIF-HVRRLSFFNGIWILFWIFLAMMFGVDWSCSVYF 154
>AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical
protein F26G5.1 protein.
Length = 566
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 306 PPAEHSYNELPILRN*K 356
PPA+HS ELP+L++ K
Sbjct: 111 PPADHSNKELPLLKSSK 127
>Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical
protein K03D3.12 protein.
Length = 305
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 360 FFFNFLKLVVHYMNVLLVVNFDIIQLMMGDLKKIS*F 250
FFF L ++ + V++V FDI+ L+ K +S F
Sbjct: 93 FFFKLLNFLIGCVLVIIVQAFDIVVLLFAIEKWLSIF 129
>Z81050-6|CAB02856.1| 713|Caenorhabditis elegans Hypothetical
protein C50B6.7 protein.
Length = 713
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 29 FLYTKNSIFYNIYW 70
FL+ K+SI YN YW
Sbjct: 8 FLFIKSSIAYNFYW 21
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 11 YRPFIKFLYTKNSIF-YNIY 67
YRPF K + T +SIF +N+Y
Sbjct: 2463 YRPFAKLIATYDSIFKFNVY 2482
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 11 YRPFIKFLYTKNSIF-YNIY 67
YRPF K + T +SIF +N+Y
Sbjct: 2463 YRPFAKLIATYDSIFKFNVY 2482
>U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 33 protein.
Length = 342
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 5 FIYRPFIKFLYTKNSIFYNIYWSK-YNIFSTTFFRFSWNTSTI 130
F Y ++ L+ + F ++ S Y FS F RF+ NTS I
Sbjct: 107 FSYMSYVGILHLSLNSFISLMLSMIYRYFSIRFKRFTANTSII 149
>U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical
protein ZC404.13 protein.
Length = 364
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 15 GLSLNSYILKIQFFTIF 65
GLS+N YI QFF++F
Sbjct: 289 GLSINDYINYFQFFSVF 305
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 11 YRPFIKFLYTKNSIF-YNIY 67
YRPF K + T +SIF +N+Y
Sbjct: 2463 YRPFAKLIATYDSIFKFNVY 2482
>Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 166 IFHEIYESG*SEYRRGIPAKP 104
I E YE G E RRG+P P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469
>Z93376-1|CAB07570.3| 472|Caenorhabditis elegans Hypothetical
protein E01F3.1a protein.
Length = 472
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 166 IFHEIYESG*SEYRRGIPAKP 104
I E YE G E RRG+P P
Sbjct: 328 ICEEFYEQGDDERRRGLPITP 348
>Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 166 IFHEIYESG*SEYRRGIPAKP 104
I E YE G E RRG+P P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469
>Z81454-2|CAB03804.2| 346|Caenorhabditis elegans Hypothetical
protein B0391.4 protein.
Length = 346
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 5 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSR 145
FIYR + F T ++N +S F FF F ++ T F L+R
Sbjct: 116 FIYRYWAVF-DTNKLAYFNGCYSLIWFFYCAFFGFQYSLGTYFFLAR 161
>U80027-15|AAC48116.2| 194|Caenorhabditis elegans Hypothetical
protein T28A11.5 protein.
Length = 194
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 189 YMNLMKKLYFMKYMSLDNLN 130
Y+N M K+YF+ S D++N
Sbjct: 49 YVNFMAKMYFLDVKSQDSMN 68
>AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 166 IFHEIYESG*SEYRRGIPAKP 104
I E YE G E RRG+P P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469
>AL132949-41|CAC35868.2| 472|Caenorhabditis elegans Hypothetical
protein E01F3.1a protein.
Length = 472
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 166 IFHEIYESG*SEYRRGIPAKP 104
I E YE G E RRG+P P
Sbjct: 328 ICEEFYEQGDDERRRGLPITP 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,718,938
Number of Sequences: 27780
Number of extensions: 112809
Number of successful extensions: 300
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -