Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10c20
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 84 2e-17
05_03_0661 - 16726958-16726966,16727133-16727234 57 3e-09
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 1.3
06_03_0336 + 19671500-19672150,19672681-19673301 27 2.3
04_01_0588 + 7657510-7657992,7658397-7658843 27 3.1
08_02_0588 + 19036509-19039235 27 4.1
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 27 4.1
01_06_0463 + 29567339-29567644,29568416-29568835 26 5.4
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 26 7.2
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 25 9.5
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 25 9.5
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 25 9.5
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 203
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST GMDPKFLRNQR+ +K N K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST G +
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 111 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 194
+KP K R L + +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 146 WHGSKIFKESKVLQEG*PEASQATREGG 229
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 1 ASVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*G 171
+ VL S S+W +SS+W I + + T + +M Q RP L W ++ G
Sbjct: 214 SGVLPSSSEWRSSSSRWDLGEITRRM-DTLDM-QMGGGQQRRPPAEDGLGWASSWFG 268
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 218 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 126
ELLGW QV A ++P + + A F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 87 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 185
++AHRNG+K T H++ G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152
>01_06_0463 + 29567339-29567644,29568416-29568835
Length = 241
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 309 FFSFYAFICLQLMFISWPLLLG 244
FF F C+ ++ WP L+G
Sbjct: 196 FFPFLTVTCVGILMAGWPFLIG 217
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 180 TFDSLKILDPCQGWIRAWSSLAF*Y-HFCELCGFGYDLYDSL 58
TF L ++ CQGW + ++ L+ Y G+ YD +
Sbjct: 280 TFQGLALIIRCQGWRQLFAGLSLNYVKVVPSVAIGFTTYDMM 321
>05_04_0124 +
18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 7 VLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLA 150
+L D W E+ KW++ R + K + +++ GT PPLA
Sbjct: 270 LLVLDDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLA 320
>05_04_0122 +
18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 7 VLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLA 150
+L D W E+ KW++ R + K + +++ GT PPLA
Sbjct: 270 LLVLDDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLA 320
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Frame = -2
Query: 192 PSCKT------FDSLKILDPCQGWI 136
P+C+T F+S+K+L PC+ W+
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWM 1472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,816,640
Number of Sequences: 37544
Number of extensions: 143989
Number of successful extensions: 482
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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