Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c20
         (313 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    89   6e-19
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    89   8e-19
At1g04030.1 68414.m00390 expressed protein                             32   0.070
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.093
At5g50350.1 68418.m06236 expressed protein                             27   2.0  
At3g48200.1 68416.m05259 expressed protein                             27   2.6  
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    27   3.5  
At4g37950.1 68417.m05365 expressed protein                             27   3.5  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    26   4.6  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    26   4.6  
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi...    26   4.6  
At3g25950.1 68416.m03234 hypothetical protein                          26   6.1  
At5g35550.1 68418.m04229 myb family transcription factor (MYB123...    25   8.1  
At4g35940.1 68417.m05113 expressed protein                             25   8.1  
At3g17010.1 68416.m02172 transcriptional factor B3 family protei...    25   8.1  
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r...    25   8.1  
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r...    25   8.1  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 45  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 203
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 88.6 bits (210), Expect = 8e-19
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 203
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 45  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 161
           K AKSK  T   Q++K + N I    + R  S+ G DP+
Sbjct: 215 KSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 31.9 bits (69), Expect = 0.093
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 60  KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 149
           KNHT H++ R ++  G K  RKT   +T G
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117


>At5g50350.1 68418.m06236 expressed protein 
          Length = 584

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +1

Query: 1   ASVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GI-- 174
           +S ++ D     +SSK  ++RII+ +    K T    +S G  G       + +  G+  
Sbjct: 283 SSAVTDDEGKDSSSSKHGTERIIRTVYAQNKATPKKRESLGNSGYGSQRKSLDDNRGVST 342

Query: 175 --KGFARRVT*SQPSNSRGRLREKLPEKQRPR 264
             KG+A ++  S+    R  L E + E+QR R
Sbjct: 343 STKGYATKLQESE-ERKRELLAEIMLEEQRGR 373


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 42  IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKP 206
           I +A S     H+   K H N I     T  ES  G+    +  + F +  NLKP
Sbjct: 548 IMVATSPYIGPHSFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNLKP 602


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 195 YPSCKTFDSLKILDPCQGWIRAWSSL 118
           YP+C  F SLK L+ C    R W++L
Sbjct: 475 YPACTVFSSLKYLELCTCSAR-WANL 499


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 40  SSKWQSQ-RIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 198
           +  WQ++ +  Q  T+  K+  M + +  RPGT    AW+  F G   + R +T
Sbjct: 408 AGSWQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 108 YHFCELCGFGYDLYDSLTLP 49
           YH CE CGF  DLY ++  P
Sbjct: 65  YH-CETCGFDVDLYCAMYPP 83


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 108 YHFCELCGFGYDLYDSLTLPF**VFNP 28
           ++ C +CGF  DL  +LTLP   + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208


>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 426

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 108 YHFCELCGFGYDLY 67
           +H  E+CG G+DLY
Sbjct: 33  FHHMEVCGIGHDLY 46


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 149 AKGGFVPGLPWLFDTISVSFAVLVMICMIL 60
           A  G VP   WL   + + FA+LV I  +L
Sbjct: 205 AADGVVPRWAWLSWLVVIGFAILVSILWVL 234


>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
           contains PFAM profile: myb DNA-binding domain PF00249
          Length = 258

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 60  KNHTNHNQNRKAHRNGIKKPRKTRHES 140
           KNH N N  ++  +   K+P++ +H +
Sbjct: 107 KNHWNSNLRKRLPKTQTKQPKRIKHST 133


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 RRVT*SQPSNSRGRLREKLPEKQRP 261
           +R+   QP N R   +EK  EKQ+P
Sbjct: 230 KRIEKQQPLNGRHNNKEKQKEKQQP 254


>At3g17010.1 68416.m02172 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 302

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 54  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKF 164
           K K   + +  +K  RN +KK  K++ +  L   P+F
Sbjct: 166 KKKTEDSKSSKKKMTRNKVKKKSKSKSKQVLDGVPEF 202


>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1147

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 60  KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 161
           K+ +N  +NR   R      +   HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784


>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1121

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 60  KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 161
           K+ +N  +NR   R      +   HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,522,902
Number of Sequences: 28952
Number of extensions: 121918
Number of successful extensions: 380
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)