Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c18
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   29   0.84 
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)                28   1.5  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   27   4.5  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      26   5.9  
SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)                   26   7.9  
SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)                   26   7.9  

>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 113  RLWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT*CSGKIIL 241
            +LW    F + G KKG FP+  ++  R+ +   +  CS  +IL
Sbjct: 1080 QLWLLSRFKINGTKKGCFPYNKQIFWRLNKVKKKE-CSHTVIL 1121


>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
          Length = 337

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 213 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 109
           L L+  + A+  V W +L FLPP++ +  D HN++
Sbjct: 128 LQLAGAVIAVLFVAWLSLKFLPPTR-RVGDYHNKY 161


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 258 KYYFANKIIFPL---HYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 109
           +Y     ++FP+   H V+ +S P    SS    +    PPS  +   R +RH
Sbjct: 316 RYLHVTALVFPITIVHLVIFMSPPSSFQSSPSVSSSSLSPPSSFQSYHRPSRH 368


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 273 QACTRKYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSD 124
           Q C   Y  +  +IFP  Y L     +  LS  R  N   + P  +KC D
Sbjct: 787 QKCLEAYLESKCVIFPRFYFLSNDELLEILSQTR--NPHAVQPHLQKCFD 834


>SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -3

Query: 201 SPIRALSSVRWGNL----PFLPPSKEKCSDRHNRHRA 103
           +PI   ++ R GNL    P L   ++ C  RH R+RA
Sbjct: 325 APIAPRTTERLGNLWCEAPALQSDRKTCGVRHRRYRA 361


>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
          Length = 514

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 152 CHQVKRNVPTATTAIAPSAKALAADV 75
           C  V R+VP A  A+ P+ KAL   +
Sbjct: 65  CMGVARHVPDAARALLPTVKALCVSM 90


>SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)
          Length = 445

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 171 WGNLPFLPPSKEKC-SDRHNRH 109
           WG+LPF   +   C S+RH  H
Sbjct: 213 WGDLPFCDQNNRSCGSNRHLNH 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,201,883
Number of Sequences: 59808
Number of extensions: 177916
Number of successful extensions: 354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)