BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10c17 (706 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 30 1.6 03_02_0271 + 7029410-7029949,7030054-7030566 30 2.1 10_06_0172 + 11473892-11474896 29 4.8 01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 29 4.8 07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028... 28 8.3 05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 28 8.3 >02_04_0515 + 23582105-23583519,23583613-23583741,23583835-23583970, 23584051-23584139,23584236-23584347,23584427-23584533, 23584630-23584723 Length = 693 Score = 30.3 bits (65), Expect = 1.6 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +2 Query: 359 PNERRTLLRIPEECSGGCSSQRSMEHPRR 445 P+E RT R P E SGG S+RS E P + Sbjct: 76 PSEGRTEDREPGEVSGGSGSERSGERPMK 104 >03_02_0271 + 7029410-7029949,7030054-7030566 Length = 350 Score = 29.9 bits (64), Expect = 2.1 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +3 Query: 225 SVRAFEKDRHETHERRAQQEDFKH-QTLDGLLINRQLWLAEGLLSCQTKG 371 SV K R E E RA +E+ + R+LW GLL+ QT G Sbjct: 201 SVVEVRKKREEEEELRAMEEEKAGIDAAAAAQVRRELWCGLGLLAAQTLG 250 >10_06_0172 + 11473892-11474896 Length = 334 Score = 28.7 bits (61), Expect = 4.8 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 372 GRYCGYPRSVRVDARLRDRWNILG 443 G Y GYP +VRVDA +N++G Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311 >01_05_0344 + 21172101-21172233,21172332-21172402,21172492-21172653, 21172995-21173100,21174242-21174439,21174565-21174631, 21174868-21175051,21175145-21175324,21175408-21175587, 21176472-21176627,21177487-21178067,21178535-21178640, 21179152-21179331,21179620-21179892 Length = 858 Score = 28.7 bits (61), Expect = 4.8 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = +3 Query: 249 RHETHERRAQQEDFKHQTLDGLLINRQLWLAE-GLLSCQTKGGRYCGYPRSVRVDARLRD 425 R ET + AQ F + ++I +Q L+ C G RY GY R +A Sbjct: 203 RKETMGKCAQLAQFDEELYKAIIIVKQSGNDTFSLIKCNFSGMRYAGYSTCFRKEAGSHG 262 Query: 426 RWNILGVFLLTQ 461 R + G+F + Q Sbjct: 263 R-DTAGIFRVHQ 273 >07_03_0740 - 21102015-21102287,21102402-21102555,21102647-21102884, 21103008-21103218,21103303-21103442,21103537-21103665, 21104120-21104960 Length = 661 Score = 27.9 bits (59), Expect = 8.3 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +1 Query: 406 WMLVSEIDGTS*AFFCSHKISTSPTHRGCDLERDNATNEPS 528 W +I G + + CS +I T P G + R AT+ PS Sbjct: 224 WSYKDDIGGRTLSVRCSFRIETKPFLNGTTMVRLPATSAPS 264 >05_07_0146 + 28018236-28018580,28018670-28018777,28018984-28019148, 28019269-28019736,28019823-28019936,28020038-28020715 Length = 625 Score = 27.9 bits (59), Expect = 8.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +1 Query: 136 NFDHDKHIFTGHGGKQR--TKKEASEHTNH 219 +FDH H HGG++R + EA H +H Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,824,262 Number of Sequences: 37544 Number of extensions: 357900 Number of successful extensions: 908 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 885 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 908 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1815633512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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