Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c12
         (362 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   2.0  
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       28   2.0  
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)                27   4.6  

>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 223  SFIYQVSNDEGRDYFKNALTKSS 155
            +F+Y++S   G +YFKN L  SS
Sbjct: 974  TFLYKLSRSSGLEYFKNILLVSS 996


>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 217 IYQVSNDEGRDYFKNALTKSSEDIRNT 137
           +Y+ +ND G  YFK+   +++ D R +
Sbjct: 55  VYRAANDNGESYFKSIFKRAANDNRES 81



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 229 FNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSI 116
           F S   + +ND G  YFK+   +++ D R +   SS +
Sbjct: 17  FRSIFDRAANDNGESYFKSIFKRAANDNRESNFKSSVV 54


>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 229 FNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSI 116
           F S   + +ND G  YFK+   +++ D R +   SS +
Sbjct: 166 FRSIFDRAANDNGESYFKSIFKRAANDNRESNFKSSVV 203


>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
          Length = 746

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 225 TPSYIKYPMMKGGTTLKTLSRNLLKILGIPFEI 127
           TP   K  +++  T +K LSR LLKI+G  + I
Sbjct: 224 TPCRSKNYILEASTIVKYLSRFLLKIVGYRYSI 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,715,964
Number of Sequences: 59808
Number of extensions: 173043
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)