Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10c12
(362 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical pr... 64 4e-11
U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical pr... 62 1e-10
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 1.3
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 1.3
Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 27 5.3
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 27 5.3
U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 26 7.0
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 26 7.0
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 26 9.3
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 26 9.3
>Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical
protein F45H10.2 protein.
Length = 90
Score = 63.7 bits (148), Expect = 4e-11
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +2
Query: 35 TMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYL 211
+MGKHFG L K+ G + ++ +EQ+AY G F+ + + + +P I YL
Sbjct: 7 SMGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYL 66
Query: 212 IYEGVEREHHRLSRKNPADFENDQ 283
+Y+ ++ + +RKNPADF NDQ
Sbjct: 67 LYDWAKKTNVAANRKNPADFANDQ 90
>U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical
protein R07E4.3 protein.
Length = 90
Score = 62.1 bits (144), Expect = 1e-10
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +2
Query: 38 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVVPPFIIGYLI 214
MGKHFG L K+ G + ++ +EQ+AY G F+ + + + +P I YL+
Sbjct: 8 MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67
Query: 215 YEGVEREHHRLSRKNPADFENDQ 283
Y+ ++ + +RKNPADF ND+
Sbjct: 68 YDWAKKTNVAANRKNPADFANDE 90
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 216 YIKYPMMKGGTTLKTLSRNLLKIL-GIPFEI 127
YI Y +KG +K L++NL K+L G+P I
Sbjct: 773 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 803
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 216 YIKYPMMKGGTTLKTLSRNLLKIL-GIPFEI 127
YI Y +KG +K L++NL K+L G+P I
Sbjct: 893 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 923
>Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical
protein F17E5.2 protein.
Length = 531
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 131 SNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVERE 235
+ G ++R + KV+P I Y++YE V ++
Sbjct: 491 TEGFTGLYRGITPNFMKVIPAVSISYVVYEKVRKQ 525
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 205 SNDEGRDYFKNALTKSSEDIR 143
+ E R+YFKN L S DIR
Sbjct: 266 TTSENREYFKNELMNSIRDIR 286
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 205 SNDEGRDYFKNALTKSSEDIR 143
+ E R+YFKN L S DIR
Sbjct: 266 TTSENREYFKNELMNSIRDIR 286
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 205 SNDEGRDYFKNALTKSSEDIR 143
+ E R+YFKN L S DIR
Sbjct: 266 TTSENREYFKNELMNSIRDIR 286
>U41532-2|AAV28353.1| 292|Caenorhabditis elegans Hypothetical
protein F11D5.7 protein.
Length = 292
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = -1
Query: 329 KLISTLNNFNLQTMFIDHF---QNQQGSSVIV 243
K++STLNN+N++ F++ NQ G+++ +
Sbjct: 64 KILSTLNNYNVRLSFVNSIITTSNQVGNALSI 95
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 205 SNDEGRDYFKNALTKSSEDIR 143
+ E R+YFKN L + DIR
Sbjct: 266 TTSENREYFKNELANAMRDIR 286
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 205 SNDEGRDYFKNALTKSSEDIR 143
+ E R+YFKN L + DIR
Sbjct: 266 TTSENREYFKNELANAMRDIR 286
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 92 ISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSR 253
++ ++RA GA SNG + + +V K PP + L +R + L R
Sbjct: 190 MALEDERAAFGASSNGAVGVVKEGNLNVLKSDPPTLFDNLKSSSAKRRYCILRR 243
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 92 ISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSR 253
++ ++RA GA SNG + + +V K PP + L +R + L R
Sbjct: 190 MALEDERAAFGASSNGAVGVVKEGNLNVLKSDPPTLFDNLKSSSAKRRYCILRR 243
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 140 IPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSRKNPADFENDQ 283
I +F FR + ++ FI+GY ++ RLS ++ NDQ
Sbjct: 20 IIGVFLIFRTAFIFIITGFILGYCLHVKDPPSDKRLSPESSKRNSNDQ 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,576,740
Number of Sequences: 27780
Number of extensions: 144740
Number of successful extensions: 341
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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