Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c12
         (362 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    30   0.53 
At5g61810.1 68418.m07756 mitochondrial substrate carrier family ...    29   0.70 
At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r...    29   1.2  
At3g52940.1 68416.m05835 C-14 sterol reductase / delta(14)-stero...    28   2.1  
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    28   2.1  
At2g35070.1 68415.m04302 expressed protein                             27   2.8  
At2g32760.1 68415.m04008 expressed protein                             27   2.8  
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ...    27   4.9  
At2g35090.1 68415.m04305 hypothetical protein                          27   4.9  
At1g05840.1 68414.m00611 aspartyl protease family protein contai...    27   4.9  
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi...    26   8.6  

>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 105 NNEHMLELFQMVFLISSEDFVRAFLK*SRPSSLDT*YMKELKGSITDYHGR 257
           N+     +FQM F + SE+ VR  ++  R  S    Y+K L+    D++ R
Sbjct: 19  NSVDTRSIFQMGFPLESEEIVREMIEKERQHSPRDDYLKRLRNGDLDFNVR 69


>At5g61810.1 68418.m07756 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier, Oryctolagus cuniculus,GI:2352427; contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 478

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 137 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 232
           G+   +R    + FKV+P   I YL+YE +++
Sbjct: 442 GLKGFYRGIFPNFFKVIPSASISYLVYEAMKK 473


>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1149

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 223 SFIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSIC 113
           SF+  V N EGRD F+  LT +  D + T     S C
Sbjct: 215 SFVEGVHNREGRDVFEKVLTSAKADRKWTFWMCRSKC 251


>At3g52940.1 68416.m05835 C-14 sterol reductase / delta(14)-sterol
           reductase / FACKEL (FK) identical to gi:9082182
          Length = 369

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 194 FIIGYLIYEGVEREHHRLSRKNP 262
           F+IGY+++ G  ++ H + +KNP
Sbjct: 251 FLIGYMVFRGANKQKH-IFKKNP 272


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +2

Query: 68  IRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRL 247
           +R   TYK+SAH +  Y          I+RRF+ + F++         ++  +    H  
Sbjct: 344 LRWTWTYKLSAHLRNNYITVFIITALEIYRRFQWAFFRIEN-------VWYKINNPKHTA 396

Query: 248 SRKNPADFEND 280
            + NP   ++D
Sbjct: 397 HQSNPLSLQHD 407


>At2g35070.1 68415.m04302 expressed protein
          Length = 158

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +2

Query: 41  GKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFK 181
           G H  +L  ++ L    + + +  A  GAI++G  ++  + +  + K
Sbjct: 25  GNHVDKLGMVKALEAINVPSTQAEALTGAITSGFESVMGKVKADIAK 71


>At2g32760.1 68415.m04008 expressed protein
          Length = 352

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 192 GGTTL--KTLSRNLLKILGIPFEIAP 121
           GG+ L  K LS+  ++ILG+PF +AP
Sbjct: 187 GGSRLGTKPLSQGSVRILGLPFSMAP 212


>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427
           (mitochondrial carrier superfamily); contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 479

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 137 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 232
           G+   +R    ++ KVVP   I Y++YE +++
Sbjct: 443 GLRGFYRGLLPNLLKVVPAASITYIVYEAMKK 474


>At2g35090.1 68415.m04305 hypothetical protein
          Length = 124

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 41  GKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRES 172
           G H  +L  ++ L    + + +  A  GAI++G+ ++  +  +S
Sbjct: 25  GNHVDKLGMVKALEAINVPSTQAEALTGAITSGLESVVEKEYQS 68


>At1g05840.1 68414.m00611 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease
          Length = 485

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 116 YAGAISNGIPNIFRRFRESVFKVVPP 193
           Y+G +  G PN+   F  SVF  V P
Sbjct: 356 YSGRVDEGFPNVTFHFENSVFLRVYP 381


>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
           histidine kinase AHK2 [Arabidopsis thaliana]
           gi|13537196|dbj|BAB40774
          Length = 1176

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 170 SVFKVVPPFIIGYLIYEGVER 232
           S+  +V  F++GY++YE + R
Sbjct: 543 SILVLVITFLVGYILYEAINR 563


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,043,545
Number of Sequences: 28952
Number of extensions: 131361
Number of successful extensions: 290
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)