Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c11
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    96   9e-22
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    90   8e-20
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    31   0.030
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   3.4  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   3.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.5  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    24   5.9  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   5.9  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    23   7.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    23   7.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   7.9  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 96.3 bits (229), Expect = 9e-22
 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +3

Query: 51  MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 227
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 228 LPPGLQVKEV 257
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 89.8 bits (213), Expect = 8e-20
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +3

Query: 51  MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 227
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 228 LPPGLQVKEV 257
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.030
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +3

Query: 111 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 260
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q  EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 34  NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 159
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 134 VLLYFDRFGVFPPRLN*KVFDIFD 63
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 145 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 276
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 158 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 48
           N+   + R L    +F VF   L+   FD+ D+ +HV
Sbjct: 14  NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 66  KDIKDFLIKARRKDAKSVKIKKNPEN 143
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 57  REIKDIKDFLIKARRKD 107
           R IKD+KD   KA  KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
            Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +3

Query: 81   FLIKARRKDAKSVKIK-----KNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 245
            F+ K R+   KSVKIK     K P+ +K        +  +  TDK    K K      + 
Sbjct: 891  FIEKGRKNQVKSVKIKGMTIIKAPDALK-NANLHNEVIVMQTTDKPIVLKAKSKKIHNIW 949

Query: 246  VKEVK*CN 269
            V+ +K  N
Sbjct: 950  VQAIKQIN 957


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 223  CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 131
            C+ F +     ++ TR++ +L  +TL  T SGF
Sbjct: 988  CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,056,714
Number of Sequences: 5004
Number of extensions: 17863
Number of successful extensions: 47
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)