BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10c11 (310 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ... 105 5e-24 At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 105 5e-24 At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)... 28 1.1 At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domai... 27 1.9 At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 27 3.4 At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 26 4.5 At5g52950.1 68418.m06570 expressed protein ; expression supporte... 26 5.9 At3g05830.1 68416.m00654 expressed protein 26 5.9 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 25 7.8 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 25 7.8 >At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum, EMBL:X69979 Length = 69 Score = 105 bits (253), Expect = 5e-24 Identities = 47/69 (68%), Positives = 62/69 (89%) Frame = +3 Query: 51 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 230 MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60 Query: 231 PPGLQVKEV 257 PPGL V+++ Sbjct: 61 PPGLSVQDL 69 >At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) Length = 69 Score = 105 bits (253), Expect = 5e-24 Identities = 47/69 (68%), Positives = 62/69 (89%) Frame = +3 Query: 51 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 230 MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60 Query: 231 PPGLQVKEV 257 PPGL V+++ Sbjct: 61 PPGLSVQDL 69 >At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6) EXL6 (PMID:11431566); similar to anter-specific proline-rich protein (APG) SP:P40602 [Arabidopsis thaliana] Length = 343 Score = 28.3 bits (60), Expect = 1.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 36 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKV 158 L V + ++KD KD+L K RR + K+K+ N F + Sbjct: 125 LRVLSAGDQVKDFKDYLKKLRRVVKRKKKVKEIVSNAVFLI 165 >At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domain, PF03109: ABC1 family Length = 540 Score = 27.5 bits (58), Expect = 1.9 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 215 FLSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRF-GVFPPRLN 87 FL L+ VS+ G++ P L +L+ LLYFDR+ + P LN Sbjct: 477 FLDLVRVSESYGLKFPREFAL---LLKQLLYFDRYTRLLAPNLN 517 >At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile PF02854: MIF4G domain Length = 1186 Score = 26.6 bits (56), Expect = 3.4 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +3 Query: 63 IKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFL 176 +KDI L++ + S+ KK+ N++ K+R RF+ Sbjct: 531 MKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFI 568 >At2g31900.1 68415.m03897 myosin family protein contains Pfam profiles: PF00063 myosin head (motor domain), PF01843 DIL domain, PF00612 IQ calmodulin-binding motif, PF02736 myosin N-terminal SH3-like domain Length = 1556 Score = 26.2 bits (55), Expect = 4.5 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +3 Query: 90 KARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 257 KA +DAK+ +I K N+ Y +I DKE A+ + PP +KEV Sbjct: 911 KADLEDAKAQEIAKLQNNLTELQEKLDEAYAAIIRDKEAAKLAIEQAPP--IIKEV 964 >At5g52950.1 68418.m06570 expressed protein ; expression supported by MPSS Length = 945 Score = 25.8 bits (54), Expect = 5.9 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +3 Query: 63 IKDIKDFLIKARRKDAKSVKIKKN 134 +KD KD + K ++KD+ SV ++N Sbjct: 670 LKDPKDLVAKFKKKDSSSVASERN 693 >At3g05830.1 68416.m00654 expressed protein Length = 336 Score = 25.8 bits (54), Expect = 5.9 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 60 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDK 200 EIK+I+D + + + + +S +K +N FK+ S + LV+ K Sbjct: 289 EIKEIRDLISEKQNLNNESWDKQKFWDNSGFKIVVSMSMLMLVVVSK 335 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 25.4 bits (53), Expect = 7.8 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +3 Query: 24 AG*KLFVFNMPREIKD 71 AG LF++N+PRE +D Sbjct: 337 AGANLFIYNIPREFED 352 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 25.4 bits (53), Expect = 7.8 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +3 Query: 24 AG*KLFVFNMPREIKD 71 AG LF++N+PRE +D Sbjct: 328 AGANLFIYNIPREFED 343 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,533,259 Number of Sequences: 28952 Number of extensions: 92912 Number of successful extensions: 265 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 262 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 265 length of database: 12,070,560 effective HSP length: 70 effective length of database: 10,043,920 effective search space used: 321405440 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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