Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c04
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       112   7e-26
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       112   7e-26
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        61   2e-10
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  112 bits (269), Expect = 7e-26
 Identities = 50/86 (58%), Positives = 61/86 (70%)
 Frame = +3

Query: 3   EIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFI 182
           ++   +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT FFI
Sbjct: 137 DLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFI 196

Query: 183 NRPGIFFGQCSEICGANHSFIPIVIE 260
            RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 197 KRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  112 bits (269), Expect = 7e-26
 Identities = 50/86 (58%), Positives = 61/86 (70%)
 Frame = +3

Query: 3   EIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFI 182
           ++   +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT FFI
Sbjct: 137 DLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFI 196

Query: 183 NRPGIFFGQCSEICGANHSFIPIVIE 260
            RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 197 KRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 29/66 (43%), Positives = 38/66 (57%)
 Frame = +3

Query: 3   EIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFI 182
           ++   +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT FFI
Sbjct: 137 DLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFI 196

Query: 183 NRPGIF 200
            +   F
Sbjct: 197 KKTWSF 202


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 293  NSINKVFD*NTFNYNRYKTMISSTNF*TLTKKNSRSI 183
            N   ++ D + FN++ YK + S TN    T   S ++
Sbjct: 2715 NRERQIIDDDNFNFDNYKIITSGTNCVEYTAMRSHAL 2751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,301,515
Number of Sequences: 59808
Number of extensions: 114855
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)