Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c02
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    48   2e-06
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.4  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   1.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   4.2  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   5.5  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   5.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.5  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.5  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   7.3  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   9.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 50/181 (27%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
 Frame = +2

Query: 152 NKNTKYFSFQGIPYAKPPVGARRFXXXXXXXXXXXXFYAYEE-GPACPSRDITYGSITVK 328
           N   K   F GI YAKPPVG  R+               Y +    CP          V+
Sbjct: 13  NGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVR 72

Query: 329 RKGM--SENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSG-NRDLHGPEL 499
                  E+C++ N++VPA      ++  E    P+L  IHGG  Q G+  +     P+ 
Sbjct: 73  NPDFKYDEDCLFLNIWVPA-----GEKPAE--GWPVLYFIHGGWLQVGNPLHYRQCDPQD 125

Query: 500 LML----KDVIVVNFNYRLAIFGYLS----LASHKIPGNNGLRDMVTLLKWVQRNAKVFG 655
           L         I+V+  +RL +FG+L+    L       N G  D    L+W  ++ + FG
Sbjct: 126 LQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFG 185

Query: 656 G 658
           G
Sbjct: 186 G 186


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 260 FYAYEEGPACPSRDITYGSI---TVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPI 430
           F   E+     ++DI+Y S+   + KR+G+S   I AN   P   + NS  +      PI
Sbjct: 125 FEGEEQSSTGNNQDISYSSVNSLSPKRRGISLMSIDANKLSPKKTSPNSGYITSPLRHPI 184

Query: 431 LVN 439
           L++
Sbjct: 185 LLS 187


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 548 IFGYLSLASHKIPGNNGLRDMVTLLKWV 631
           I GYLSL+  K  GN+ +     LL WV
Sbjct: 50  ISGYLSLSKSKALGNSSVAGSDILLSWV 77



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 153 FALSSLPHTGPESNFTSTS 97
           F +  LPH  P+S FT T+
Sbjct: 489 FQIEDLPHPDPQSTFTGTN 507


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 247 WLKWLQFRKSSGAYGWL 197
           WL WL F KSS    WL
Sbjct: 193 WLSWLSFSKSSPVVLWL 209


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = -3

Query: 493 RSMQISIARSCLEPTTVDI----HQYGQ*IVFAKFIAVQSRRRRYKYISINTVFTHS 335
           R  +I+++ S + PT+VDI      + + IV  +F  VQS  R Y YIS+  V THS
Sbjct: 48  RRSKIALS-SFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYYNYISLYFV-THS 102


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 158 FCLRSPLSRTQVPSLTSPAHHIF 90
           FCL  P+  T +PS  S   H+F
Sbjct: 310 FCLYLPIPLTSIPSTPSIRSHVF 332


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 373 YKYISINTVFTHSFAFDGNTAVSNISRRTGRPFFVS 266
           Y+YIS N V+  + A       S I+  T   FF +
Sbjct: 98  YEYISFNKVYEIALALGSGLVASGITSETTMLFFAA 133


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 204 GGFAYGMPWKLKYLVFLFALSSLPHTGPESNFTSTSHFL 88
           GGF YG+   ++  +FLF    +    P ++  S   F+
Sbjct: 85  GGFMYGVGGTIQITLFLFLAIQIKKKAPAAHTVSECFFI 123


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 100 CAGEVRLGTCVRERGERKQKYQI 168
           CAGE+ L  C+++  ER  K +I
Sbjct: 607 CAGEIHLERCLKDLRERFAKIEI 629


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 409  RRQFTAHIGEYPRWWV 456
            R QF  H G+ P WW+
Sbjct: 1477 RSQFLHHFGKNPSWWL 1492


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 329 RKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNI 442
           RKG     I A    P     +   LCEDN++P L  +
Sbjct: 66  RKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTV 103


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 198 FAYG-MPWKLKYLVFLFALSSLPHTGPESNFTSTSHFLVKD 79
           F YG +P +   +V     +++PH GP +     S F++ D
Sbjct: 265 FVYGGLPVQESPIVLFGERAAMPHGGPSNRRLKKSEFVLMD 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,486
Number of Sequences: 5004
Number of extensions: 59862
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)