Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b24
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    37   0.002
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.4  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   3.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.6  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   10.0 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   10.0 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   10.0 
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   10.0 

>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 185 NDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQFVL 364
           N +  A R ++RI  +  +   +R  R+YEKP + R RV  E+ +A +   + R +    
Sbjct: 55  NSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPSEKRSRVRSERHRARFRAGIVRLVNLAK 114

Query: 365 RKNR 376
              R
Sbjct: 115 NMRR 118


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 182 FVQTLCEL*KKDVYLIIGAATDAFYSDWIKKFQTFNS 72
           F+ T C++ + D+ +I       FY +WI K +  N+
Sbjct: 267 FIDTACKVWRVDMTMIAYETNRNFYMEWIHKKRIINT 303


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 381 SCLFFLNTNCIFLSISSL*MALHFSWLTRRLV*NGFS*YLVSLY 250
           +C +  N +  FLS+  +   +++ +L R    NG S + + LY
Sbjct: 51  ACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLY 94


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 488 HVFQLLSRSIPIIHMMSGYNLLFTFDLSFSNILERVHVYFFLIQIVF 348
           H+  LLS + PI+   +    LFTF++     LE +H Y+  I  +F
Sbjct: 182 HIKTLLSDNSPIVVPAA----LFTFEVVCPEKLEIIHPYYHRICTLF 224


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 95  LSNHCKMHLSLRLLSNRHPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYE 274
           +SN CK+HLSL+          + +++++ +D  +   L+ R+      L+  RL   + 
Sbjct: 106 VSNSCKLHLSLQ--GQEAAQLRSDSLYLEASDKRDLTSLVTRVKELARKLSAARLAFRFR 163

Query: 275 K 277
           K
Sbjct: 164 K 164


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -2

Query: 494 QCHVFQLLSRSIPIIHMMSGY-----NLLFTFDLSFSNILERVHVYFFLIQIVFFSPYLH 330
           QC    L+ R +  ++++S Y     NL    +L    +L ++H  FF + I F    + 
Sbjct: 283 QCQALYLIIR-LTCLYLLSCYESEILNLSSDTNLESDFLLRQIHAAFFFVTICFTWISIS 341

Query: 329 CRWP 318
           C  P
Sbjct: 342 CLKP 345


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 606 MFVCV*FSRCLGILNIFNFYSGIVVFFYIEFFG 508
           +FV + F+ C+G L +   Y GI + + I F G
Sbjct: 400 VFVTI-FAVCMGALAVLFNYIGITISWIITFIG 431


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = -3

Query: 625 YVVIIFNVCLCIIF*MFRYLKYL*FLFWNRSFF----LH*VFWRGLSHNVMFFN-F*AGL 461
           ++ I  NVCLC+ F +   LK L  LF +   F    L+  FW  L+  ++    F   +
Sbjct: 41  HITIGLNVCLCLFFAIANALKTL--LFGSLQTFELELLYEQFWITLTEIMLAITVFREAI 98

Query: 460 SQLFT**VVIIYYLHLIFHSVTSWK 386
           S  F   +  + +   +FHS+ S++
Sbjct: 99  SISFFMLLSTLMFAR-VFHSICSFR 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,389
Number of Sequences: 5004
Number of extensions: 60607
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)