Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b24
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45279| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_24417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_903| Best HMM Match : DUF1328 (HMM E-Value=2.4)                     29   3.4  
SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_45279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 182 NNDIDNACRLINRIMGKEGLLAQYRLTRY-YEKPFQTRRRVNHEKCKAIYNEDMERKIQF 358
           N+D+D A      I+ KEG+ AQ+  ++   EK  + R+     + K + ++D    + F
Sbjct: 105 NDDLDKAYTEFKDIISKEGISAQFGKSQMATEKSVEKRKPTREGEYKKVTSQDYPSML-F 163

Query: 359 VLRK 370
            LR+
Sbjct: 164 ALRR 167


>SB_24417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 173 FVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKI 352
           FV+  D + +C+ I+    +E L     +  Y+ KP +   R   E  +  + E++E+K 
Sbjct: 117 FVEALDFEFSCKEIDVGFLREMLPQDVIIMSYFIKPARVMHRPPDEARE--FWEELEKKA 174

Query: 353 QFVLRKNRHEP 385
             ++  N H+P
Sbjct: 175 NLIMVVNEHDP 185


>SB_903| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 350

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 225 IILLINLHALSISLFCTNTVRAMKEGCLFDNRRS 124
           I+ + N+ A+ + L C    R+ + GCLF N RS
Sbjct: 152 ILEMYNIQAVLLLLSCLFGGRSSERGCLFQNSRS 185


>SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 467 RSIPIIHMMSGYNLLFTFDLSFSNILERVHVYFFLIQIVFFSPYLHCR 324
           R +P++ M++   L F +D     ILE  H  F  +Q+  ++  +H +
Sbjct: 475 RPVPVLSMVTNQVLDFIYDTHGHRILEWSHDLFGSVQLQTYADVVHAK 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,555,109
Number of Sequences: 59808
Number of extensions: 376855
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)