Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b24
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    29   2.1  
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass...    28   6.6  

>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 146 HPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQ 286
           H + +AR  +    +I     LINR+MG  G L Q R  +    PFQ
Sbjct: 392 HLAKVARIAYASQGEISG--ELINRLMGIVGHLIQIRSLKVKALPFQ 436


>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 738

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 198 LSISLFCTNTVRAMKEGC-LFDNRRSDRCIL 109
           LS+ L C N+ R ++EGC LFD+ R D+ +L
Sbjct: 473 LSVLLACNNS-RLVEEGCELFDSFRKDKIML 502


>At3g58460.1 68416.m06516 rhomboid family protein /
           ubiquitin-associated (UBA)/TS-N domain-containing
           protein contains Pfam profiles PF01694: Rhomboid family,
           PF00627: UBA/TS-N domain
          Length = 403

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 461 IPIIHMMSGYNLLFTFDLSFSNILERVHVYFFLIQIVFFSPYLH 330
           I +I +++GY+  +      S I+ R  VY F   I+F    LH
Sbjct: 36  IYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,931
Number of Sequences: 28952
Number of extensions: 279390
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)