Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   1.8  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.2  

>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 449 STGWVWLKTTRNRCDMWAWRASSPEHYSSARRCVAGCNLLLGSRKTNGL 595
           S  W+ +   RN  D+  WR ++        R    CN LLGS K+  L
Sbjct: 53  SLRWIAIIQLRNSIDI-IWRKNTKMSLLPEERDFIRCNALLGSIKSENL 100


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 596 EARSFCGCLAGDCSQQHIAAQMSSAPATMHATPTYRTGSA*SSARPS 456
           E +SF    +   S   IA  +SSAP      PTY   ++  S R S
Sbjct: 540 ETKSFSTKASTPLSTDDIATPLSSAPNPPSVMPTYARKTSSHSERSS 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,281
Number of Sequences: 5004
Number of extensions: 47793
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)