Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b23
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               32   0.35 
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)                  29   3.3  
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 568 QEIAASNTSPRR*VVLRRRCTPRPHIAPVPRSLQPDP 458
           QE++ S    +R  +LR  C    H+ P+P S +P P
Sbjct: 458 QEVSFSQRFQKRGSILRELCIHAKHVQPIPASTRPPP 494


>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
          Length = 696

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +2

Query: 431 YVRER*STGWVWLKTTRNRC-----DMWAWRASSPEHYSSARRC 547
           YV+E  +T  VWLKT+ N C       W+ + ++P+++   R+C
Sbjct: 417 YVQE--TTYAVWLKTSANSCMRGRPCSWSHKRTTPKNHRDERKC 458


>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 521 EHYSSARRCVAGCNLLLGSRKTNGLRLIHIRSTI 622
           +H  S +  + GC+LL   ++ N L  +H+R+ +
Sbjct: 341 DHSQSCQELIRGCDLLERQQRKNTLLTLHVRALV 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,797,919
Number of Sequences: 59808
Number of extensions: 385566
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)