Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b23
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19850.1 68417.m02909 lectin-related low similarity to PP2 le...    28   6.2  
At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr...    27   8.2  

>At4g19850.1 68417.m02909 lectin-related low similarity to PP2
           lectin polypeptide [Cucurbita maxima] GI:410437
          Length = 194

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
 Frame = +2

Query: 44  LRLRKRNSLTICSRDVAALPYIPTRAVNFIDGSIF------YIFILCNFLVIVDFCFYYI 205
           +R+++R +++ C+R+++ L     + +N   GS+       Y F  C  +  V FCF+ I
Sbjct: 1   MRVKRRKTVSCCTREISQLHGQSLKQINIGVGSLILTKHQGYEF-YCKKVTFVFFCFFKI 59


>At2g23950.1 68415.m02860 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 634

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 526 LLICAAMCCWLQSPARQPQNERASTDTHQIDDPXHVISMPDE 651
           LL+C  + C L S  R P+ E      +++ DP  V    DE
Sbjct: 16  LLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDE 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,823,547
Number of Sequences: 28952
Number of extensions: 254756
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)