Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b20
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   5e-05
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            43   2e-04
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                38   0.010
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          32   0.50 
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)              31   0.67 
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          30   1.5  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4)             29   2.7  
SB_31045| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   4.7  
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      29   4.7  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               29   4.7  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 28   6.2  

>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 9/163 (5%)
 Frame = +2

Query: 74  IAKYVLFIANLVFSLAGLAIIRLGVAVLRNLRDLQDILPVNAL--PXXXXXXXXXXXXXX 247
           I K ++ I N +F L GL +  +G+     L    +I  VN    P              
Sbjct: 9   IVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVNYATGPRVVIAVGFIIALVA 68

Query: 248 XXXXXXXXKESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSL 427
                   KE++CMLI +  F+++L+ ++I    + +     + + +   +  A      
Sbjct: 69  FLGCCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDILKAIENYPG 128

Query: 428 RDVYHV--MEALFNCCGTTGPSSYDGIL-----SQLPPSCCAS 535
           ++   +  M+  F CCG    + +   +     S +P SCC S
Sbjct: 129 KNEKSINDMQTKFKCCGADNYTDWQSNIKMKNSSSVPDSCCKS 171


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
 Frame = +2

Query: 272 KESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFN--TSSLRDVYHV 445
           KE++CMLI + I ++I++ ++I  A++ +     + S +T  +         + +     
Sbjct: 430 KENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYPKNNKAAIDA 489

Query: 446 MEALFNCCGTTGPSSYDGILSQL-----PPSCCASP 538
           M+  F CCG  GPS +     Q+     P SCC  P
Sbjct: 490 MQMDFECCGAKGPSDWT-FYGQMKYKAGPGSCCGKP 524


>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
 Frame = +2

Query: 65  PEFIAKYVLFIANLVFSLAGLAIIRLGVAVLRNLR-DLQDILPVNALP-XXXXXXXXXXX 238
           P    KY LF  N++F LAG  I+ +G+ +   ++ ++  +  +N  P            
Sbjct: 56  PSLCVKYSLFTINVIFWLAGAVILAVGIFIFIEMKEEITKLADLNFQPAVIFLALGGLLF 115

Query: 239 XXXXXXXXXXXKESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTA--- 409
                      +E+RC+L  Y     I++A  I    + F +   + + +T+ +  A   
Sbjct: 116 VITIFGCIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFYYKDVLETKVTAQLKDAIVL 175

Query: 410 FNTSSLRDVYHVMEAL---FNCCGTTGPSSYD 496
           +   +  D++ +++ +     CCG  G + +D
Sbjct: 176 YRDPTKGDLHLIIDTVQTELQCCGVQGLNDWD 207


>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
 Frame = +2

Query: 272 KESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAF----NTSSLRDVY 439
           +E+ C+L  +S+ + I+  +++ L + VF F   V + I   + TA     + + L+++ 
Sbjct: 70  RENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVIVEKLQTAVTKYRDNADLQNLI 129

Query: 440 HVMEALFNCCGTTGPSSYD 496
             ++  F CCG  G + +D
Sbjct: 130 DGVQQEFKCCGAKGINDWD 148


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 19/175 (10%)
 Frame = +2

Query: 80  KYVLFIANLVFSLAGLAIIRLGVAVLRNLRD-------LQDILPVNALPXXXXXXXXXXX 238
           K+++F  NL+F LAG AI  +GV ++ +  +       L   +     P           
Sbjct: 11  KFMVFFFNLLFLLAGCAIFAIGVWIISSKDEVAGDYSRLTGTINYKTAPILCIVIGIVTV 70

Query: 239 XXXXXXXXXXXKESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNT 418
                      KES+CML TY   +  +  +++   ++ + +   +   +   + +  N 
Sbjct: 71  IVAFLACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHGDIRSTMNE 130

Query: 419 SSLRDVYHVMEAL------FNCCGTTGPSSYDGIL------SQLPPSCCASPVDN 547
             L     V  A+      F CCG      +            +P SCC  P D+
Sbjct: 131 YHLSGHDAVTRAIDEIHRDFKCCGNAQYRDWFETKWAKTHPDMVPRSCCKDPSDS 185


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
 Frame = +2

Query: 59  CCPEFIAKYVLFIANLVFSLAGLAIIRLGVAVLRNLRDLQDILPVN---ALPXXXXXXXX 229
           CC     K      N +   +G+AI+ +G+ V+ +      +L  +    +P        
Sbjct: 9   CCNVTWLKTFHMFFNTILLFSGIAILAVGIWVITSRSQYNSLLSNDNYVTVPGLMIAAGC 68

Query: 230 XXXXXXXXXXXXXXKESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTA 409
                         KE+R +L++Y I +V++  ++I   +V   + S+++  +   +   
Sbjct: 69  LVIIVCVVGCVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEISYELEVGIRGK 128

Query: 410 FNTSSLRD 433
            N     D
Sbjct: 129 MNRYGFTD 136


>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
          Length = 108

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +2

Query: 272 KESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAF-NTSSLRDVYHVM 448
           K     L  Y   +V++V +++   ++ F F  +V  ++ + ++    N     D+ +++
Sbjct: 2   KADNVFLFQYKWVIVVIVILQVLGGLLAFAFWPNVRKSVQNQISKGIVNYRDNLDLQNII 61

Query: 449 EAL---FNCCGTTGPSSYD 496
           + +   F CCG++  + +D
Sbjct: 62  DGIQENFKCCGSSSINDWD 80


>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 103 PCFFVGRSSYYTSWSGRLKKSTGSSRYSTSQRFANRDNRPRMHHIHHCIPSVLWSDKGIK 282
           P +F G S       G  +K TGSS  + S       N   +H  ++C+P+V+++  G++
Sbjct: 240 PAYFAGTSR------GHYRKVTGSSNMTISIICVEGMNGGAVHIDYNCVPNVVYTHPGVE 293


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 533  SPVDNTFYAPNAFPGCTTRLIDYFDTFGRAIGSVL 637
            SP D   Y PNA   C +  + YF   GR +   +
Sbjct: 2097 SPGDRVTYQPNASSHCNSNHLSYFKFVGRVVAKAV 2131


>SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4)
          Length = 177

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/45 (26%), Positives = 28/45 (62%)
 Frame = +2

Query: 311 MVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHV 445
           M+I++ + I +  ++   ++  T+T  S  TT+F+++ L + YH+
Sbjct: 113 MIIIIIIFIIITTIIILTITISTTTAVSSPTTSFSSAPLSNHYHL 157


>SB_31045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 421 QLKRRISRHGSSIQLLWNNR 480
           +L+RR+S HG+S +  W+NR
Sbjct: 13  ELRRRLSSHGNSARHCWHNR 32


>SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 850

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 294 ISIHLDSFIAPQHARNAMMNMMHPRTIIPIGK 199
           I  H+D+  A  HA NA+     PR ++P G+
Sbjct: 378 IPYHVDAIYAIAHALNAIYRCTEPRGLLPNGR 409


>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 284 CMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVM 448
           C+L TY  FM+ILV  ++ +A+ +      +       +TT+ ++SS +  Y  M
Sbjct: 46  CLLKTYFSFMLILVVAEVTIAVYLLIEKDKLLCCGMKPLTTSHSSSSDKSCYEGM 100


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +2

Query: 281 RCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVMEA 454
           +C    YSI + ++  + I ++  +F F+S +T+  +S  ++  +TS    VY V  A
Sbjct: 186 QCHQHHYSIIISVIDIINITISFSIFSFISIITA--SSSASSTSSTSPSASVYSVSSA 241


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +1

Query: 307  IHGDTGGREDLPG----YRGIRFSVRRHQHNNQLGDHSVQHEQLK-RRISRHGS 453
            I  +TG RE+ PG    +R  R    R QHN ++  H  +H   K  R  R GS
Sbjct: 911  ISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSARKHERRLRKGS 964


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 305  IFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAF-NTSSLRDVYHVMEAL 457
            +FM+   A   Y+A++V      VT+T+T+++   F +   L DV  V++ +
Sbjct: 1262 LFMLYGEASSAYVAMIVLNLFVGVTATVTTFILQLFPDDEVLTDVNDVIKLI 1313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,080,509
Number of Sequences: 59808
Number of extensions: 461621
Number of successful extensions: 1774
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)